Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D11
(833 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56549| Best HMM Match : Spermine_synth (HMM E-Value=1.5e-29) 149 4e-36
SB_55793| Best HMM Match : Spermine_synth (HMM E-Value=1.6e-15) 120 1e-27
SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017) 38 0.008
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38) 36 0.054
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1) 30 2.0
SB_43221| Best HMM Match : PHF5 (HMM E-Value=2) 29 6.1
SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023) 29 6.1
SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_56549| Best HMM Match : Spermine_synth (HMM E-Value=1.5e-29)
Length = 294
Score = 149 bits (360), Expect = 4e-36
Identities = 68/99 (68%), Positives = 79/99 (79%)
Frame = +2
Query: 536 SLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQV 715
S G VLVLDG+IQCT +DEFSYQEMIS LPL H NP+ VL++GGGDGGV RE +KHP V
Sbjct: 157 SFGTVLVLDGVIQCTDRDEFSYQEMISMLPLNSHPNPKKVLVIGGGDGGVIREASKHPSV 216
Query: 716 KHIVLVEIDDRVIELSKRYLPFMAVGSDSPKLTLHVGDG 832
+ IV EID+ VI +SK+YLP MAVG SPKLT H+GDG
Sbjct: 217 ESIVQCEIDEDVINISKKYLPNMAVGYTSPKLTQHIGDG 255
>SB_55793| Best HMM Match : Spermine_synth (HMM E-Value=1.6e-15)
Length = 317
Score = 120 bits (290), Expect = 1e-27
Identities = 56/123 (45%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
Frame = +2
Query: 464 SFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKN 643
SFE+ EVL +++ ++ +F G V+ LDGIIQ T++DEF Y EM++ PL H
Sbjct: 194 SFEIGEVLFEQQTDSWHLIIFRNEEFGTVMALDGIIQTTERDEFIYHEMLTHTPLFAHGA 253
Query: 644 PENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGS-DSPKLTLH 820
+ VLI+GGGDGG+ REV KHP+V+H+ VEID VI++ K YLP + G+ D P+ +
Sbjct: 254 AKRVLIIGGGDGGILREVLKHPEVEHVTQVEIDQSVIDMCKTYLPNHSNGAFDDPRANIV 313
Query: 821 VGD 829
+ D
Sbjct: 314 IAD 316
>SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)
Length = 453
Score = 38.3 bits (85), Expect = 0.008
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Frame = +2
Query: 443 MWPGGTFSFEVKEVLHTEKSKYQNIQVF----DTTSLGKVLVLDGIIQCTQKDEFSYQEM 610
+WPG + +K++L +EKS Q +VF D T GK + + T + YQ M
Sbjct: 132 LWPGPVSTEAIKDMLKSEKSS-QMQRVFADSEDVTFTGKAVA--WLAAATDPSQCVYQLM 188
Query: 611 ISFLPLCCHKN----PENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRY 772
++ P+C + N P+ ++ G + E+A+ K +V + +R +R+
Sbjct: 189 VNHRPMCVYSNYLDYPDPDIMKKSGSVQIVAELAREYVGKPVVPAALMNRPTRGERRF 246
>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
Length = 451
Score = 35.5 bits (78), Expect = 0.054
Identities = 21/74 (28%), Positives = 38/74 (51%)
Frame = +1
Query: 388 KQEKDGQTKNQLVYGIMRYVAWGYFLIRSQRSTAHRKIKIPEYPSF*YNQFGEGSCLGRN 567
K+ QTK V ++R YF+I+ + T R++++P+ PSF N + + +
Sbjct: 46 KKSGADQTKRH-VLALLRAAFAIYFVIQIKERTVRRELEMPDQPSFDNNNLVQNTICSQE 104
Query: 568 HTMHSER*VFLSGN 609
HT + +L+GN
Sbjct: 105 HTANGLS--YLNGN 116
>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
Length = 627
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 647 ENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGSDSPKLTLHVG 826
+ LIVG G GG+A + + I VE+D+ V+ ++K + + +L +HV
Sbjct: 423 KQALIVGLGGGGLAMFIYQFFSQVAIDAVELDEAVVSVAKTQFGCI----EDKRLAIHVK 478
Query: 827 DG 832
DG
Sbjct: 479 DG 480
>SB_43221| Best HMM Match : PHF5 (HMM E-Value=2)
Length = 361
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 341 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 439
T L+L+ + + G Y K+K K WF E C
Sbjct: 207 TKLLLEISEKAGFKYGDKQKCQKTNAPWFDEEC 239
>SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
Length = 836
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 341 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 439
T L+L+ + + G Y K+K K WF E C
Sbjct: 478 TKLLLEISEKAGFKYGDKQKCQKTNAPWFDEEC 510
>SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 458 TFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 625
TF ++K + KY N V TTS G V D ++ CT +M+ F+P
Sbjct: 170 TFKDKIKLNETVARVKYNNTGVEVTTSSGDVYSADYVV-CTFSTGVLASDMVEFVP 224
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,653,881
Number of Sequences: 59808
Number of extensions: 523243
Number of successful extensions: 1311
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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