Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D11
(833 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical... 165 3e-41
AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine sy... 165 3e-41
U82936-1|AAB40869.1| 682|Caenorhabditis elegans protein kinase ... 29 4.1
U82935-1|AAB40868.1| 680|Caenorhabditis elegans protein kinase ... 29 4.1
U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase ... 29 4.1
U29376-4|AAM51504.1| 682|Caenorhabditis elegans Protein kinase ... 29 4.1
U29376-3|AAM51503.1| 680|Caenorhabditis elegans Protein kinase ... 29 4.1
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 29 5.4
Z81124-11|CAB03370.2| 306|Caenorhabditis elegans Hypothetical p... 23 6.5
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 28 7.2
>AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical
protein Y46G5A.19 protein.
Length = 314
Score = 165 bits (402), Expect = 3e-41
Identities = 72/129 (55%), Positives = 99/129 (76%)
Frame = +2
Query: 446 WPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 625
WPG FS +VK+VL EKSKYQ++ VF++T+ G VLVLDGI+Q T++DEFSYQEM++ LP
Sbjct: 43 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102
Query: 626 LCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGSDSP 805
+ H +P+ VLI+GGGDGG+ REV KH V+ + + EID+ VI+++K++LP M+ G P
Sbjct: 103 MFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 162
Query: 806 KLTLHVGDG 832
KL L GDG
Sbjct: 163 KLDLFCGDG 171
>AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine
synthase protein.
Length = 314
Score = 165 bits (402), Expect = 3e-41
Identities = 72/129 (55%), Positives = 99/129 (76%)
Frame = +2
Query: 446 WPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 625
WPG FS +VK+VL EKSKYQ++ VF++T+ G VLVLDGI+Q T++DEFSYQEM++ LP
Sbjct: 43 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102
Query: 626 LCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGSDSP 805
+ H +P+ VLI+GGGDGG+ REV KH V+ + + EID+ VI+++K++LP M+ G P
Sbjct: 103 MFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 162
Query: 806 KLTLHVGDG 832
KL L GDG
Sbjct: 163 KLDLFCGDG 171
>U82936-1|AAB40869.1| 682|Caenorhabditis elegans protein kinase C2
B isoform protein.
Length = 682
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 602 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 757
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 572 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 623
>U82935-1|AAB40868.1| 680|Caenorhabditis elegans protein kinase C2
A isoform protein.
Length = 680
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 602 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 757
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 572 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 623
>U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase c
protein 2, isoformc protein.
Length = 936
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 602 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 757
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 712 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 763
>U29376-4|AAM51504.1| 682|Caenorhabditis elegans Protein kinase c
protein 2, isoformb protein.
Length = 682
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 602 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 757
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 572 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 623
>U29376-3|AAM51503.1| 680|Caenorhabditis elegans Protein kinase c
protein 2, isoforma protein.
Length = 680
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 602 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 757
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 572 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 623
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 380 NY*SKKKMDKLKTNWFTESCDMWPGGTFSFEVKEV 484
N ++ ++K+ NW CD+W T F V+++
Sbjct: 161 NVEDRESIEKIVDNWRNAPCDIWNENTVVFSVQKL 195
>Z81124-11|CAB03370.2| 306|Caenorhabditis elegans Hypothetical
protein T21B4.1 protein.
Length = 306
Score = 23.4 bits (48), Expect(2) = 6.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 347 LILDFNCRLGTNY*SKKKMDKLKTNW 424
++L +N +GT + S++K+ L NW
Sbjct: 221 VLLFYNQIIGTKFASERKIGMLLQNW 246
Score = 23.4 bits (48), Expect(2) = 6.5
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 509 QNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKNPENVLIVGGGDG 679
QN F TT L ++ + C +++ + M+S L C N ++VG +G
Sbjct: 244 QNWSNFGTTPL---IIQISYLLCNKRNTRAIMVMLSPRRLICRNCRRNQVVVGPAEG 297
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
F18C12.2b protein.
Length = 2271
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 422 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 586
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 587 DE 592
D+
Sbjct: 1042 DQ 1043
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
F18C12.2a protein.
Length = 2279
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 422 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 586
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 587 DE 592
D+
Sbjct: 1042 DQ 1043
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 422 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 586
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 587 DE 592
D+
Sbjct: 1042 DQ 1043
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,536,984
Number of Sequences: 27780
Number of extensions: 417862
Number of successful extensions: 1013
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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