Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D11
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    25   1.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   3.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.0  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
          protein.
          Length = 85

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 19 LYPYIIVDIHNNMC 60
          L+P  I+ +HNNMC
Sbjct: 16 LFPEKIIGLHNNMC 29


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 266 FALLTNSTLLNSHFTITIYMSKDMIRYI*QTETLDNDLL 150
           +A+  N T +NS   I++  SK  I+   QTE  ++  L
Sbjct: 541 YAMKMNETYINSGNKISLATSKSFIKANSQTEVSNSKKL 579


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 560 PRQEPSPNWLYQKLGYSGILI 498
           P+  P PNW   K G  G  I
Sbjct: 107 PKLTPYPNWAQNKAGACGSAI 127


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 783 WRSVPIVLS*LFMWV 827
           W+ V +VL  LF+WV
Sbjct: 474 WKFVAMVLDRLFLWV 488


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 783 WRSVPIVLS*LFMWV 827
           W+ V +VL  LF+W+
Sbjct: 511 WKYVAMVLDRLFLWI 525


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 783 WRSVPIVLS*LFMWV 827
           W+ V +VL  LF+W+
Sbjct: 511 WKYVAMVLDRLFLWI 525


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 783 WRSVPIVLS*LFMWV 827
           W+ V +VL  LF+W+
Sbjct: 506 WKYVAMVLDRLFLWI 520


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +3

Query: 765 KGTSRSWRSVPIVLS*LFMWV 827
           +     W+ V +VL  +F+W+
Sbjct: 533 ESVEEDWKYVAMVLDRIFLWI 553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,432
Number of Sequences: 438
Number of extensions: 5211
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)