Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D10
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             229   8e-74
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         153   2e-37
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   29   3.1  
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      29   3.1  
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)                    29   3.1  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               28   7.2  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  229 bits (561), Expect(2) = 8e-74
 Identities = 103/166 (62%), Positives = 125/166 (75%)
 Frame = +3

Query: 258 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 437
           ++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG                    
Sbjct: 95  RIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGT 154

Query: 438 XXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 617
                 EYNVE VD  PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PHS+KRFPG
Sbjct: 155 DDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPHSMKRFPG 214

Query: 618 YDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIK 755
           YD+ESK F+AEVHR HIFG HVAEYM SL ++DE+S+KRQF  YIK
Sbjct: 215 YDSESKDFSAEVHRNHIFGKHVAEYMRSLAEEDEESYKRQFSAYIK 260



 Score = 66.1 bits (154), Expect(2) = 8e-74
 Identities = 27/42 (64%), Positives = 33/42 (78%)
 Frame = +3

Query: 135 RRRAGXTXXYARKRLVVQXKHKYNTPKYRLIVRLSNKDVTCQ 260
           RR  G T  YARKRL+ Q K+KYNTPKYR +VR++NKD+ CQ
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  153 bits (370), Expect = 2e-37
 Identities = 69/112 (61%), Positives = 80/112 (71%)
 Frame = +3

Query: 261 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 440
           +AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG                     
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60

Query: 441 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 596
                EYNVE +D  PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 61  EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 586 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 473
           +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 621 DAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIK 755
           D+  K+ NAE+ RA      +++ + S   D+E +  R+F  + K
Sbjct: 157 DSSVKRGNAEIRRARFRATTISQVVQSFRSDEERNSVRKFIAHYK 201


>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
          Length = 624

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 586 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 473
           +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 222 LIVRLSNKDVTCQVAYSRIEGD-HIVC 299
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 270 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 368
           ++  GDH+  A+YSH ++ R+ V + L    AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 631  DSAS*PGNLLME*GTLRPPSTAPFIAPKTRAPV 533
            D+   P   +M   T+RPP T  F+   T+APV
Sbjct: 1653 DTTVAPETTVMPDTTMRPPKTDVFVTEATKAPV 1685


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,716,175
Number of Sequences: 59808
Number of extensions: 474069
Number of successful extensions: 1311
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)