Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D10
(758 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 321 1e-87
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 321 2e-87
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 321 2e-87
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 321 2e-87
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 321 2e-87
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 321 2e-87
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 319 8e-87
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 167 3e-41
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 163 6e-40
U76609-1|AAB18361.1| 145|Homo sapiens ribosomal L5 protein prot... 124 3e-28
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 321 bits (789), Expect = 1e-87
Identities = 147/228 (64%), Positives = 176/228 (77%)
Frame = +3
Query: 72 LGFVKVVXHKQSFKRSQVKFKRRRAGXTXXYARKRLVVQXKHKYNTPKYRLIVRLSNKDV 251
+GFVKVV +K FKR QVKF+RRR G T YARKRLV+Q K+KYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 252 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 431
CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 432 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 611
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PHS KRF
Sbjct: 121 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180
Query: 612 PGYDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIK 755
PGYD+ESK+FNAEVHR HI G +VA+YM L ++DED++K+QF +YIK
Sbjct: 181 PGYDSESKEFNAEVHRKHIMGQNVADYMRCLMEEDEDAYKKQFSQYIK 228
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 321 bits (788), Expect = 2e-87
Identities = 147/228 (64%), Positives = 176/228 (77%)
Frame = +3
Query: 72 LGFVKVVXHKQSFKRSQVKFKRRRAGXTXXYARKRLVVQXKHKYNTPKYRLIVRLSNKDV 251
+GFVKVV +K FKR QVKF+RRR G T YARKRLV+Q K+KYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 252 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 431
CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 432 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 611
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PHS KRF
Sbjct: 121 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180
Query: 612 PGYDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIK 755
PGYD+ESK+FNAEVHR HI G +VA+YM L ++DED++K+QF +YIK
Sbjct: 181 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIK 228
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 321 bits (788), Expect = 2e-87
Identities = 147/228 (64%), Positives = 176/228 (77%)
Frame = +3
Query: 72 LGFVKVVXHKQSFKRSQVKFKRRRAGXTXXYARKRLVVQXKHKYNTPKYRLIVRLSNKDV 251
+GFVKVV +K FKR QVKF+RRR G T YARKRLV+Q K+KYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 252 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 431
CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 432 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 611
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PHS KRF
Sbjct: 121 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180
Query: 612 PGYDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIK 755
PGYD+ESK+FNAEVHR HI G +VA+YM L ++DED++K+QF +YIK
Sbjct: 181 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIK 228
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 321 bits (788), Expect = 2e-87
Identities = 147/228 (64%), Positives = 176/228 (77%)
Frame = +3
Query: 72 LGFVKVVXHKQSFKRSQVKFKRRRAGXTXXYARKRLVVQXKHKYNTPKYRLIVRLSNKDV 251
+GFVKVV +K FKR QVKF+RRR G T YARKRLV+Q K+KYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 252 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 431
CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 432 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 611
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PHS KRF
Sbjct: 121 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180
Query: 612 PGYDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIK 755
PGYD+ESK+FNAEVHR HI G +VA+YM L ++DED++K+QF +YIK
Sbjct: 181 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIK 228
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 321 bits (788), Expect = 2e-87
Identities = 147/228 (64%), Positives = 176/228 (77%)
Frame = +3
Query: 72 LGFVKVVXHKQSFKRSQVKFKRRRAGXTXXYARKRLVVQXKHKYNTPKYRLIVRLSNKDV 251
+GFVKVV +K FKR QVKF+RRR G T YARKRLV+Q K+KYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 252 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 431
CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 432 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 611
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PHS KRF
Sbjct: 121 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180
Query: 612 PGYDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIK 755
PGYD+ESK+FNAEVHR HI G +VA+YM L ++DED++K+QF +YIK
Sbjct: 181 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIK 228
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 321 bits (788), Expect = 2e-87
Identities = 147/228 (64%), Positives = 176/228 (77%)
Frame = +3
Query: 72 LGFVKVVXHKQSFKRSQVKFKRRRAGXTXXYARKRLVVQXKHKYNTPKYRLIVRLSNKDV 251
+GFVKVV +K FKR QVKF+RRR G T YARKRLV+Q K+KYNTPKYR+IVR++N+D+
Sbjct: 8 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 67
Query: 252 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 431
CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 68 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 127
Query: 432 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 611
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PHS KRF
Sbjct: 128 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 187
Query: 612 PGYDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIK 755
PGYD+ESK+FNAEVHR HI G +VA+YM L ++DED++K+QF +YIK
Sbjct: 188 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIK 235
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 319 bits (783), Expect = 8e-87
Identities = 146/228 (64%), Positives = 175/228 (76%)
Frame = +3
Query: 72 LGFVKVVXHKQSFKRSQVKFKRRRAGXTXXYARKRLVVQXKHKYNTPKYRLIVRLSNKDV 251
+GFVKVV +K FKR QVKF+RRR G T YARKRLV+Q K+KYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 252 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 431
CQ+AY+RIEGD IVCA Y+HELP+YGVKVGLTNYAAAY TG
Sbjct: 61 ICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 432 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 611
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PHS KRF
Sbjct: 121 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180
Query: 612 PGYDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIK 755
PGYD+ESK+FNAEVHR HI G +VA+YM L ++DED++K+QF +YIK
Sbjct: 181 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIK 228
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 167 bits (407), Expect = 3e-41
Identities = 76/125 (60%), Positives = 90/125 (72%)
Frame = +3
Query: 222 LIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXX 401
+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 1 MIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 60
Query: 402 XXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGG 581
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGG
Sbjct: 61 NRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGG 120
Query: 582 LNVPH 596
L++PH
Sbjct: 121 LSIPH 125
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 163 bits (396), Expect = 6e-40
Identities = 73/98 (74%), Positives = 87/98 (88%)
Frame = +3
Query: 72 LGFVKVVXHKQSFKRSQVKFKRRRAGXTXXYARKRLVVQXKHKYNTPKYRLIVRLSNKDV 251
+GFVKVV +K FKR QVKF+RRR G T YARKRLV+Q K+KYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 252 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 365
CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAA
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAA 98
>U76609-1|AAB18361.1| 145|Homo sapiens ribosomal L5 protein
protein.
Length = 145
Score = 124 bits (299), Expect = 3e-28
Identities = 53/76 (69%), Positives = 67/76 (88%)
Frame = +3
Query: 528 TTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMXSLE 707
TTTG +VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G +VA+YM L
Sbjct: 1 TTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLM 60
Query: 708 QDDEDSFKRQFXKYIK 755
++DED++K+QF +YIK
Sbjct: 61 EEDEDAYKKQFSQYIK 76
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,858,637
Number of Sequences: 237096
Number of extensions: 2163209
Number of successful extensions: 3740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3722
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -