Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D10
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   226   1e-59
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   225   2e-59

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  226 bits (552), Expect = 1e-59
 Identities = 111/226 (49%), Positives = 144/226 (63%)
 Frame = +3

Query: 78  FVKVVXHKQSFKRSQVKFKRRRAGXTXXYARKRLVVQXKHKYNTPKYRLIVRLSNKDVTC 257
           FVK       FKR QVKF+RRR G T   AR RL+ Q K+KYNTPKYR +VR +NKD+  
Sbjct: 3   FVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 258 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 437
           Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG                    
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122

Query: 438 XXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 617
                 +++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G
Sbjct: 123 VEATGEDFSVEPTDS-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181

Query: 618 YDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIK 755
           +  E+K+ +AE+HR +I+G HV+ YM  L +D+ +  +  F  YIK
Sbjct: 182 FHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIK 227


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  225 bits (550), Expect = 2e-59
 Identities = 111/226 (49%), Positives = 144/226 (63%)
 Frame = +3

Query: 78  FVKVVXHKQSFKRSQVKFKRRRAGXTXXYARKRLVVQXKHKYNTPKYRLIVRLSNKDVTC 257
           FVK       FKR QVKF+RRR G T   AR RL+ Q K+KYNTPKYR +VR +NKD+  
Sbjct: 3   FVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 258 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 437
           Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG                    
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122

Query: 438 XXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 617
                 +++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G
Sbjct: 123 VEATGEDFSVEPTDS-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181

Query: 618 YDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIK 755
           +  E+K+ +AE+HR +I+G HV+ YM  L +D+ +  +  F  YIK
Sbjct: 182 FHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIK 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,373,058
Number of Sequences: 28952
Number of extensions: 296825
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)