Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D08
         (854 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68930.1 68414.m07889 pentatricopeptide (PPR) repeat-containi...    31   0.98 
At2g33100.1 68415.m04058 cellulose synthase family protein simil...    30   2.3  
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    29   3.9  
At5g48175.1 68418.m05951 expressed protein contains weak similar...    28   6.9  
At1g34520.1 68414.m04290 long-chain-alcohol O-fatty-acyltransfer...    28   6.9  

>At1g68930.1 68414.m07889 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 743

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -3

Query: 486 LNSFSSDRTFLTYLNYIFQYINSALK*IINTGYATSIILIHYTS*ILLKVKFRHY 322
           L+SFS+D     YL+ I+  +      II+ GY      +H+     +KVK  +Y
Sbjct: 620 LHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNY 674


>At2g33100.1 68415.m04058 cellulose synthase family protein similar
           to gi:2827143 from Arabidopsis thaliana (Ath-B)
          Length = 1036

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +3

Query: 552 IYFCKSALLRVIFSIKLFINSIKPINIKYILSMNVFIRLYVFVENLCLLF*KYFSSCLDL 731
           I+F K+  +     +K F+  +  +N+      ++F+ +Y F+  LCL   K+    LD+
Sbjct: 790 IFFSKNNAMFATRRLK-FLQRVAYLNVGIYPFTSIFLVVYCFLPALCLFSGKFIVQSLDI 848

Query: 732 *FI 740
            F+
Sbjct: 849 HFL 851


>At2g48050.1 68415.m06014 expressed protein ; expression supported by
            MPSS
          Length = 1500

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 685  IYVYYFRSILVVVWIYNLFVQSIXENRTNFYHI 783
            +Y Y F + L+V ++  +F QS+ +N++ F  +
Sbjct: 1305 LYAYIFGADLIVFFLVAIFYQSVIKNKSEFIDV 1337


>At5g48175.1 68418.m05951 expressed protein contains weak similarity
           to thioglucoside glucohydrolase (GI:5524767)
           [Arabidopsis thaliana]
          Length = 115

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 621 PINIKYILSMNVFIRLYVFVEN 686
           P++IKY+L   VF+  ++FV+N
Sbjct: 61  PVSIKYLLMFFVFVFYFLFVDN 82


>At1g34520.1 68414.m04290 long-chain-alcohol O-fatty-acyltransferase
           family protein / wax synthase family protein  wax
           synthase - Simmondsia chinensis, PID:g5020219  similar
           to wax synthase [gi:5020219] from Simmondsia chinensis
          Length = 287

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/43 (23%), Positives = 28/43 (65%)
 Frame = +3

Query: 552 IYFCKSALLRVIFSIKLFINSIKPINIKYILSMNVFIRLYVFV 680
           ++FCK+A+  V+ ++  + +S+ PI +  +  +++++ L V +
Sbjct: 118 VFFCKAAIFGVLLNVHNYKSSLPPILLICLYPLHLYLVLDVLL 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,096,126
Number of Sequences: 28952
Number of extensions: 199641
Number of successful extensions: 341
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)