Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D06
         (413 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.39 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   0.89 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   1.6  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   3.6  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.6 bits (51), Expect = 0.39
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 117 YTDISTKQRTHIYLHTTCPYESVKFEPNTR 28
           + + S KQRTH       P E +K EP  +
Sbjct: 367 HVEESDKQRTHQPFLLNIPSEGIKVEPRDK 396


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 0.89
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 265 NNHNHTKH*GYYIECYCTVKLYIHVPAHGA 176
           NN NH  H G++I     V  + HV A+G+
Sbjct: 318 NNQNHHHHAGHHIHAQHHVVNH-HVAANGS 346


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = -3

Query: 114 TDISTKQRT-HIYLHTTCPYESVKFEP 37
           +D    Q T H Y H    Y SVK EP
Sbjct: 27  SDCDKNQNTEHNYTHNNEMYHSVKEEP 53


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
 Frame = +2

Query: 164 CYRSGTV---CWDVNVKLYC 214
           C+   T+   CW + V++YC
Sbjct: 48  CFLLSTILGTCWIIYVRIYC 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,427
Number of Sequences: 336
Number of extensions: 1774
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)