Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D06
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    26   2.0  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    24   8.1  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    24   8.1  

>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 165 QNIK*LHTSILSVIPMYTDISTKQRTHIYLHTTCPYESVK 46
           +N+K    S L++  ++   + +  TH +L+  CP E +K
Sbjct: 537 KNLKSFLNSCLTIDTIFRATAAELLTHSFLNQACPTEDLK 576


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 95 NGHIFTYTQHVPTNR 51
          +  IF+Y +HVP NR
Sbjct: 28 SNRIFSYAEHVPLNR 42


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 157 NVLLSVWHRVLGRECKALLYNNIRYSSPNVLYDCDC 264
           NV L++  +V+G E +    +N+RY  P     CDC
Sbjct: 291 NVGLNILTKVMGLEYQIFEDSNLRYPLPPY---CDC 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,660
Number of Sequences: 5004
Number of extensions: 26693
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)