Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D06
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624           29   1.1  
04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674...    28   2.6  
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338...    28   3.4  
11_08_0088 + 28283124-28283330,28285639-28286322                       27   5.9  

>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
          Length = 528

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 16  F*HCACVWLEFYRFVGTCCV*VNMCPLFRTDIRVHGDYA 132
           F +CA   L  YR  G+  +  N+C +F T + V+G YA
Sbjct: 388 FMYCAIPALFLYRTYGSMSIMWNICLMFITGMFVNGPYA 426


>04_04_0867 +
           28865857-28866657,28866778-28867113,28867248-28867451,
           28867567-28867746
          Length = 506

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 129 VIPMYTDISTKQRTHIYLHTTCPYESVKFEPNTRTVLKTN 10
           ++  +T++S K RT   L  TC Y       N   +LKTN
Sbjct: 52  LLEYHTELSRKYRTFRMLTPTCNYVYTVEPANVEHILKTN 91


>03_06_0576 +
           34832900-34832911,34833006-34833122,34833752-34833810,
           34833901-34833960,34834197-34834250,34834332-34834380,
           34834493-34834540,34834889-34834954,34835591-34835641,
           34835732-34835851,34835921-34836005,34836428-34836509,
           34836666-34836774,34837005-34837051,34837131-34837188,
           34839114-34839220,34839700-34839765,34839833-34839879,
           34839977-34840042,34840146-34840243,34840344-34840469,
           34840551-34840835,34840920-34840985,34841079-34841228
          Length = 675

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 87  HIYLHTTCPYESVKFEPNTRTVL 19
           H  +H T PY+++ F+P  RT+L
Sbjct: 479 HANVHGTLPYDNLHFDPVLRTLL 501


>11_08_0088 + 28283124-28283330,28285639-28286322
          Length = 296

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 136 SERNPHVHGYQYETTDTYLLTH 71
           +ER+ H H Y +  TDT + TH
Sbjct: 274 TERDTHKHMYTHPNTDTCMYTH 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,857,882
Number of Sequences: 37544
Number of extensions: 143604
Number of successful extensions: 296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)