Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D06
         (413 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_54781| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)          27   6.1  
SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   8.1  
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   8.1  
SB_3271| Best HMM Match : PTPS (HMM E-Value=6.6)                       27   8.1  

>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 144  TSILSVIPMYTD--ISTKQRTHIYLHTTCPYESVKFEPNTRTVLKTNDNS 1
            TS   +IP+  D  I  K+   + LHT  P   V   PNT TV  T+D++
Sbjct: 3145 TSKTIMIPINNDKDIEPKEDFTVQLHTNDP--RVSLNPNTATVFITDDDA 3192


>SB_54781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +2

Query: 98  FVLISVYMGITLRIDVC----NYLMFCYRSGTVCWDVNVKLYCTITFDIVALM 244
           FVL+  + G  + + +C    N L FC ++   C  V V +  T+T  + A++
Sbjct: 249 FVLVYWHTGYQVFLRICRHYDNKLSFCRQNNCHCVTVTVTVTTTLTMAVTAIV 301


>SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)
          Length = 428

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 124 PHVHGYQYETTDTYLLTHNMSLRIGKIRAKHT 29
           PH+ GY Y+ T++Y   +    RIG  + +HT
Sbjct: 384 PHLQGYFYDFTESY--CNERGRRIGFQQGRHT 413


>SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 350

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 214 TVKLYIHVPAHGARPITKH*IIT-YINSERNPHVHGYQYET 95
           T+ L +++P    R I K  +I  Y+NS  NP ++G +  T
Sbjct: 254 TIFLNVYLPGKVPRAINKWSLILGYLNSMMNPAIYGIRNPT 294


>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 775

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 129 VIPMYTDISTKQRTHIYLHTTCPYESVKFEPNTRTVLKT 13
           +IP+ +D +T   THI      P E +  EP   T + +
Sbjct: 586 MIPLQSDYNTSTNTHILTCYMFPQEPLSEEPEDNTSMNS 624


>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1507

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 196 ECKALLYNN--IRYSSPNVLYDCDC 264
           +C  ++Y+   + Y  P V+YDC C
Sbjct: 767 DCPRVIYDYPCVTYDCPRVIYDCPC 791


>SB_3271| Best HMM Match : PTPS (HMM E-Value=6.6)
          Length = 191

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 181 RVLGRECKALLYNNIRYSSPNVLYDCDCYCTVNLFLILSCEM 306
           ++  REC   ++N   +S   +  DC+C    ++ L L   M
Sbjct: 82  KICPRECAIAIHNLTSHSVGELFQDCECVNRDSICLTLKARM 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,116,474
Number of Sequences: 59808
Number of extensions: 214698
Number of successful extensions: 493
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)