Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D06
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of m...    29   1.8  
U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.        29   1.8  
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    27   5.4  
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    27   7.1  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    27   7.1  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    27   7.1  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    27   7.1  

>U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of mes
           (in same operon)protein 3 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 196 HVPAHGARPITKH*IITYIN---SERNPHVHGYQYETTDTYLLTHNMSLRIGKIRAKHTH 26
           H+P    +P+     I + N     RNP     Q +    Y + ++  L++G++RAK  H
Sbjct: 28  HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87


>U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 196 HVPAHGARPITKH*IITYIN---SERNPHVHGYQYETTDTYLLTHNMSLRIGKIRAKHTH 26
           H+P    +P+     I + N     RNP     Q +    Y + ++  L++G++RAK  H
Sbjct: 28  HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 251 YKTLGLLYRML-LYSKALHSRPSTRCQTDNKTLNNYI 144
           YKT+G+L  M+  Y  A H+  +T  Q+DNK   N I
Sbjct: 524 YKTVGMLKNMIGFYDLARHAVEAT-AQSDNKITWNVI 559


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 111  DISTKQRTHIYLHTTCPYESVKFEPNT 31
            D++ K+RTHI  H T  Y   +  P T
Sbjct: 2266 DVNDKKRTHIVNHPTLTYLFEELNPET 2292


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 111  DISTKQRTHIYLHTTCPYESVKFEPNT 31
            D++ K+RTHI  H T  Y   +  P T
Sbjct: 2266 DVNDKKRTHIVNHPTLTYLFEELNPET 2292


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 111  DISTKQRTHIYLHTTCPYESVKFEPNT 31
            D++ K+RTHI  H T  Y   +  P T
Sbjct: 2266 DVNDKKRTHIVNHPTLTYLFEELNPET 2292


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 111  DISTKQRTHIYLHTTCPYESVKFEPNT 31
            D++ K+RTHI  H T  Y   +  P T
Sbjct: 2266 DVNDKKRTHIVNHPTLTYLFEELNPET 2292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,442,809
Number of Sequences: 27780
Number of extensions: 151908
Number of successful extensions: 344
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)