Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D06
         (413 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59490.1 68418.m07456 haloacid dehalogenase-like hydrolase fa...    26   8.7  
At3g48200.1 68416.m05259 expressed protein                             26   8.7  
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa...    26   8.7  

>At5g59490.1 68418.m07456 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P53078 SSM1 protein
           {Saccharomyces cerevisiae}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 266

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 87  HIYLHTTCPYESVKFEPNTRTVL 19
           H Y+H   PYE++K +P  R++L
Sbjct: 83  HRYVHGRLPYENLKPDPVLRSLL 105


>At3g48200.1 68416.m05259 expressed protein
          Length = 1088

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 84  IYLHTTCPYESVKFEPNTRTVLKTNDNS 1
           + L T  P + +K    TRTV  TNDN+
Sbjct: 236 VNLRTHVPEKLLKLNNQTRTVQATNDNN 263


>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
           profiles PF00085: Thioredoxin, PF00515: TPR Domain;
           similar to tetratricopeptide repeat protein 2
           (GI:7248701) [Drosophila melanogaster]; similar to DnaJ
           homolog subfamily C member 7 (Tetratricopeptide repeat
           protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
           [Homo sapiens]
          Length = 699

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 131 LRIDVCNYLMFCYRSGTVCW 190
           LR+D CN +++C R+   CW
Sbjct: 492 LRLDPCNAILYCNRA--ACW 509


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,666,196
Number of Sequences: 28952
Number of extensions: 126248
Number of successful extensions: 229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)