Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D04
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    29   0.88 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   1.2  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   3.5  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   4.7  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   6.2  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    26   6.2  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   8.2  

>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 223 PSVTPAPPQQFVTVVPAQQMGP 288
           P   P P  Q+VT++PA+++GP
Sbjct: 280 PDHIPGPDAQWVTILPARKLGP 301


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
 Frame = +1

Query: 208 LYPAVPSVTPAPPQQFVTVVPAQQMGPE------PTNTSCPSCSAAIVTR-------VDH 348
           LYP V   TP P   ++ V+P     P+      PT+  CP C   +  R       +++
Sbjct: 629 LYPPVACGTPIPDCPYLCVLPKSCHHPQVKHNCHPTSEPCPPCPYFVKKRCLCGKHILEN 688

Query: 349 VPVTKTHLFALLLC--LIGC----CPCACIP--YCTDSCK 444
            P  + ++    LC  L+ C    C   C P   C  SCK
Sbjct: 689 QPCYRENVRCGELCNKLLSCKTHFCEKLCHPDGECESSCK 728


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 671 KLCFYMYPQTHLDLFVLQGKKRYLF 597
           KLC Y+Y   HLD  V   K  YLF
Sbjct: 191 KLCIYLYEARHLDQ-VWDEKSTYLF 214


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 214 PAV-PSVTPAPPQQFVTVVPAQQMGPEPTNTS-CPSCSAAIVTRVD 345
           PA+ P VTPAPP    T        P P  +S  PS   A +T  +
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHAN 766


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 217 AVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSC 318
           A PSV+P P QQ        +    PTN +  SC
Sbjct: 533 AKPSVSPMPLQQSTGKTEVAKRAQFPTNVNYSSC 566


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 635 LNVFEDTYKNRVLFYSIMYKFSHXLPKCWLQLYDSECWY-FQNK 763
           +N  ED YK+  L Y I+   S  L     + YD E W+ FQ +
Sbjct: 312 INHAEDFYKSLELPYRIVAIVSGALNNAAAKKYDLEAWFPFQGE 355


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 605 IAFYLEEQIGLNVFEDTYKNRVLFYSIMYKFS 700
           I F+L     + + E  Y+N+ +FYS++  F+
Sbjct: 453 IPFFLPSDKLIMLVESEYRNKHIFYSLLNSFT 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,496,205
Number of Sequences: 5004
Number of extensions: 71496
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)