Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D04
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0313 + 2216498-2216953 32 0.70
08_02_0497 - 17811413-17811529,17811644-17811724,17812693-178128... 31 1.6
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832... 30 2.1
02_03_0221 - 16554910-16555560 29 3.7
07_03_0600 + 19866757-19867218,19867920-19868429 29 4.9
04_04_0138 + 23067885-23068245,23068393-23068634 29 4.9
07_01_0310 + 2209084-2209554 29 6.5
03_05_0864 - 28362146-28362500,28362585-28362629,28362727-28363085 29 6.5
12_02_0233 - 16023062-16023253,16023528-16023609,16023699-160238... 28 8.6
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571... 28 8.6
03_02_0352 + 7749902-7751788,7752547-7752615 25 9.4
>07_01_0313 + 2216498-2216953
Length = 151
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 214 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVP 354
PAVP VT PP + VPA M P P + P+ + + V VP
Sbjct: 67 PAVPKVT-LPPMPAIPTVPAVTMPPMPAVPAVPAVTLPPMPAVPTVP 112
>08_02_0497 -
17811413-17811529,17811644-17811724,17812693-17812815,
17812945-17813193
Length = 189
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 162 ASTKSASVQQPDTARSIPGRSFRHPR-APPAVRYSCSG 272
A +AS+ A ++PGR+FR PR + P SC G
Sbjct: 2 AMAAAASLLPASAAPTLPGRAFRPPRNSTPTASLSCDG 39
>06_02_0066 -
11081446-11081544,11081639-11081846,11083122-11083257,
11083339-11083541,11083616-11083765,11083848-11083964,
11084623-11085119
Length = 469
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 165 STKSASVQQPDTARSIPGRSFRHPRAPPAVRYSC--SGTTNGP 287
S + A ++ +A S+ GRSF +P A RYS T+NGP
Sbjct: 338 SRRQAKLEAAASAASLYGRSFAYPPANNLNRYSTPPQSTSNGP 380
>02_03_0221 - 16554910-16555560
Length = 216
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 376 ALLLCLIGCCPCACIPYC-TDSCKDA 450
AL CL+G C C C TDS +DA
Sbjct: 78 ALTACLVGACALCCFLLCFTDSYRDA 103
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 214 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCP 312
P P P PPQQF +P QQ P P + + P
Sbjct: 76 PPPPQYAPPPPQQF--QLPHQQYAPPPQHYAPP 106
>04_04_0138 + 23067885-23068245,23068393-23068634
Length = 200
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 226 SVTPAPPQQF-VTVVPAQQMGPEP-TNTSCPSCSAAIVTRVDHVPV 357
S P+ P VT P QQM P P T++ P S+ + D VPV
Sbjct: 142 STAPSTPTPVTVTRAPPQQMTPSPKTSSQTPEYSSGLKLIADCVPV 187
>07_01_0310 + 2209084-2209554
Length = 156
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 214 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCS 321
PAVP+VT PP + +PA + P P + P+ +
Sbjct: 23 PAVPAVT-LPPMPAIPAIPAATLPPIPAVPTVPNAA 57
>03_05_0864 - 28362146-28362500,28362585-28362629,28362727-28363085
Length = 252
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Frame = +1
Query: 214 PAVPSVTPAPPQQFVTVVPAQQMG----PEPTNTSCPSCSAAIVTRVDHVPVTKTHLFAL 381
P PS P P QQ T P QQ P+ P+ +A+ D V + T F +
Sbjct: 28 PRPPSAQPPPEQQPPTPTPTQQQSMQAQPQARPRRAPAAAASGADSTDWVATSLTRRFGI 87
>12_02_0233 -
16023062-16023253,16023528-16023609,16023699-16023809,
16023890-16024141,16024227-16024580,16024893-16025548,
16025554-16026459,16026550-16026747
Length = 916
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 214 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 315
PA S TP+ Q PA + PEP + PS
Sbjct: 548 PAAGSSTPSSSQAMTAAAPAPPLPPEPPSPRHPS 581
>06_03_0436 +
20755816-20756025,20756124-20756240,20756942-20757137,
20757393-20757544,20757653-20757736,20757848-20757925,
20757958-20758116,20758219-20758251,20759119-20759826,
20759917-20759998,20760093-20760449,20760586-20760692,
20760796-20761001,20761480-20761623,20761715-20761800,
20762120-20762283,20762559-20763119
Length = 1147
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 493 NR*IFQLVQ*IINCKNNILVLLFNSILSYELSI 591
NR +F VQ + CK N + L+ IL+Y+L I
Sbjct: 627 NRKLFNEVQELKGCKANSIAHLYADILNYQLLI 659
>03_02_0352 + 7749902-7751788,7752547-7752615
Length = 651
Score = 25.0 bits (52), Expect(2) = 9.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 162 ASTKSASVQQPDTARSIPGRSFRHPR 239
A K+A QPD A S PGR R R
Sbjct: 227 AVCKAAPAGQPDFAMSSPGRGKRRRR 252
Score = 21.4 bits (43), Expect(2) = 9.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 9 DTVDRPRRTWT 41
DTVDR +++WT
Sbjct: 196 DTVDRIKQSWT 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,936,962
Number of Sequences: 37544
Number of extensions: 451041
Number of successful extensions: 1567
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1563
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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