Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D04
         (881 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               33   0.40 
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   30   2.2  
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06)         29   5.0  
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)                 29   5.0  
SB_35568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_6299| Best HMM Match : RVT_1 (HMM E-Value=6.1e-33)                  29   6.6  
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)                 28   8.7  
SB_11806| Best HMM Match : DUF77 (HMM E-Value=3.8)                     28   8.7  
SB_26070| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_24731| Best HMM Match : DUF1534 (HMM E-Value=8.8)                   28   8.7  

>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 403 CPCACIPYCTDSCKDANHYCPNCNAYI 483
           CPC  + YC  +C    +YCP C  +I
Sbjct: 419 CPCGHV-YCCQTCASNLYYCPLCKTFI 444



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 403 CPCACIPYCTDSCKDANHYCPNCNAYIGSYNR*IFQL 513
           CPC  + +C+  C D   +CP CN  +    +  F +
Sbjct: 362 CPCGHLMFCS-RCADNMKFCPLCNESVNGNQKIYFAM 397


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 272 HNKWALSPRTLAALHAVRQSSPE 340
           HN W  SP++ A LH  R SSP+
Sbjct: 826 HNAWTSSPQSPATLHNARTSSPQ 848


>SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +1

Query: 223 PSVTPAPPQQFVTVVPAQQMGPEPTNT 303
           P+ TPAP     T VP Q  GP PT T
Sbjct: 594 PAPTPAPAPVGTTAVPQQAQGPGPTVT 620


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 394 IGCCPCACIPYCTDSCKDANHYCPNCNAYI 483
           I  CP  C P C+D C     Y PN + ++
Sbjct: 705 IAPCPQVCAPACSDICCGFGAYAPNPDTHV 734


>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1212

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 214  PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 315
            PA P   P PP     V P +Q  P PTN + P+
Sbjct: 1069 PAPPPRQPPPPSTSQPVPPPRQPDPIPTNPAHPT 1102


>SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06)
          Length = 231

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
 Frame = +1

Query: 409 CACIPYCT---DSCKDANHYCP 465
           C C PYCT   D C D + +CP
Sbjct: 209 CRCDPYCTSFKDCCADFDTFCP 230


>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
          Length = 959

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
 Frame = +1

Query: 409 CACIPYCT---DSCKDANHYCP 465
           C C PYCT   D C D + +CP
Sbjct: 142 CRCDPYCTSFKDCCADFDTFCP 163


>SB_35568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 9/24 (37%), Positives = 21/24 (87%)
 Frame = +3

Query: 450 KPLLSELQRVHWKLQSLNISVGSI 521
           KPL S +Q++H+K++++N+++ +I
Sbjct: 530 KPLNSLVQKIHFKMENINVALDAI 553


>SB_6299| Best HMM Match : RVT_1 (HMM E-Value=6.1e-33)
          Length = 283

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 9/24 (37%), Positives = 21/24 (87%)
 Frame = +3

Query: 450 KPLLSELQRVHWKLQSLNISVGSI 521
           KPL S +Q++H+K++++N+++ +I
Sbjct: 101 KPLNSFVQKIHFKMENINVALDAI 124


>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +1

Query: 235 PAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVT 360
           PA P   V   PA    P P  T+ P  + +  T  D  P T
Sbjct: 96  PAQPDTDVPPPPATTSAPPPPTTTAPPATTSPPTTTDSPPTT 137


>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
          Length = 530

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 382 LLCLIGCCPCACIPYCTDSCKDANHYCPN 468
           L C +GC P  C P CT +C       PN
Sbjct: 441 LTCPVGC-PSMCAPSCTPACCAEQQCWPN 468


>SB_11806| Best HMM Match : DUF77 (HMM E-Value=3.8)
          Length = 144

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 205 GLYPAVPSVTPAPPQQFVTVVPAQQMG 285
           G+YP++P V P PP Q  T  PA   G
Sbjct: 10  GIYPSLPRVCPPPPPQTPT-APASTGG 35


>SB_26070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 475 RCNSDSNGLHLCRSPCSKGYKH-MGNNLLGK 386
           RC  DSN   + ++ C K Y++  G+NL GK
Sbjct: 3   RCEQDSNLRGILQTKCRKMYRYGQGSNLRGK 33


>SB_24731| Best HMM Match : DUF1534 (HMM E-Value=8.8)
          Length = 128

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 190 CCTEADFVEAVRSARQTNRFSVHYGPFRFSFTNHKMFYTRAI 65
           CC E D     R   QT RF   + PF  ++   K ++  AI
Sbjct: 21  CCDERDSRFYYRLVLQTKRFLKDFSPFDSAYFRIKYYFQAAI 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,117,666
Number of Sequences: 59808
Number of extensions: 542748
Number of successful extensions: 1579
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)