Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D04
         (881 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42720.1 68418.m05203 glycosyl hydrolase family 17 protein si...    31   1.3  
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    29   4.1  
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    28   7.2  
At3g58560.1 68416.m06527 endonuclease/exonuclease/phosphatase fa...    28   9.5  
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein...    28   9.5  

>At5g42720.1 68418.m05203 glycosyl hydrolase family 17 protein
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 438

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 8   RYRGSSEADVDAIHFYSSLNSSGIKHFVIRETKSKWP 118
           +Y    +A VDA+  YS+LNS G K   I   ++ WP
Sbjct: 235 KYMNMFDAQVDAV--YSALNSMGFKDVEIMVAETGWP 269


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
 Frame = +1

Query: 214 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSC-PSCSAAIVTRVDHVPVTKTHL------ 372
           P V   T  PP Q  T  P       PT     P     + TR+D VP+  T        
Sbjct: 171 PPVKPPTTTPPVQPPTYNPPTTPVKPPTAPPVKPPTPPPVRTRIDCVPLCGTRCGQHSRK 230

Query: 373 -FALLLCLIGCCPCACIPYCTDSCKDANHYCPNCNA 477
              +  C+  C  C C+P  T   K+    C +C A
Sbjct: 231 NVCMRACVTCCYRCKCVPPGTYGNKEK---CGSCYA 263


>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 427 CTDSCKDANHYCPNCNAYIGSYNR*IFQLV 516
           C+  C + ++ CP C+  IG+Y   I + V
Sbjct: 77  CSSCCTNVSNKCPYCSLAIGNYRSRIMERV 106


>At3g58560.1 68416.m06527 endonuclease/exonuclease/phosphatase
           family protein similar to SP|P31384 Glucose-repressible
           alcohol dehydrogenase transcriptional effector (Carbon
           catabolite repressor protein 4) {Saccharomyces
           cerevisiae}; contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 602

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 643 HI*TYLFFKVKSDIYLVLCSVHSSK 569
           H   Y +F+V+SD  + +CSVH S+
Sbjct: 47  HFLKYRWFRVQSDKKVAICSVHPSE 71


>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 303

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 427 CTDSCKDANHYCPNCNAYIGSYNR*IFQLV--Q*IINCKN 540
           C+  CK   + CP C+  IG +   I + +    +++C N
Sbjct: 70  CSSCCKKVKYKCPYCSLRIGFFRSRILEKIVEAVVVSCPN 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,968,559
Number of Sequences: 28952
Number of extensions: 366448
Number of successful extensions: 984
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)