Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D03
(463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces p... 42 3e-05
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 32 0.049
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 28 0.80
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 27 1.1
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 27 1.4
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 25 4.3
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 4.3
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 25 5.6
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.6
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 7.4
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 24 9.8
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 24 9.8
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 24 9.8
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 24 9.8
>SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 71
Score = 42.3 bits (95), Expect = 3e-05
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Frame = +3
Query: 177 ENWGTEDA--DDEDVSVWEDNWED-DVIQDDFNQQLRQQLEK 293
ENW +D D D ++WE+NW+D D+ DDF+ QL+ +L+K
Sbjct: 24 ENWPMKDTELDTGDDTLWENNWDDEDIGDDDFSVQLQAELKK 65
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 31.9 bits (69), Expect = 0.049
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 171 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQ-LRQQLEKL 296
P EN + D +DVS+ DN DV QD FN++ ++Q++ L
Sbjct: 378 PQEN-SAQIYDGKDVSMVNDNMHSDVRQDSFNKESIKQRIPSL 419
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 27.9 bits (59), Expect = 0.80
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 183 WGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 308
W ++ +D SVW + +D + + + +LEKL D++
Sbjct: 537 WKIKNGSIDDFSVWRSAFANDALDRLLEKVILPKLEKLMDEE 578
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 189 TEDADDEDVSV-WEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 311
TE+A DED SV E++ E++ +D+ + +Q+ K +KS
Sbjct: 202 TEEASDEDESVDLEEDEEEEDEEDEEGDEEKQEPPSKKSKKS 243
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 1.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 207 EDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQ 305
+ +S+W + D + D F Q+++ + E LKD+
Sbjct: 162 DKLSIWTETDMSDRVTDAFKQKMQFEAELLKDE 194
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 4.3
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 189 TEDADDEDVSVWEDNWEDD-VIQDDF 263
T +A E++ W+DN ED+ ++ DF
Sbjct: 35 TNEAQREEIITWKDNREDEGEVKTDF 60
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +3
Query: 183 WGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKD 302
+G +D D+ED S +D ++ + + + + R++LEK+ +
Sbjct: 122 YGGDDYDNEDYSEEDDEFDARMEEQEALRLQRKRLEKVSE 161
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 216 IHLHHQRLLYPNFPQEILR 160
+H +HQRLL +FPQ+ R
Sbjct: 134 LHKNHQRLLGMSFPQDGFR 152
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 5.6
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Frame = -2
Query: 246 RRLPSCLPKPIHLH-----HQRLLYPN-----FPQEILRTRHPLL-ANQGLLSVCQPL 106
+ +P LP PIH H H + YPN FPQ I LL A+ L V PL
Sbjct: 588 QNVPQQLPPPIHSHLSDDQHIQYSYPNTFVNRFPQNIHHPSANLLDASAALNPVQNPL 645
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 24.6 bits (51), Expect = 7.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 246 RRLPSCLPKPIHLHHQRLLYPN 181
R+ L + IH HH+RLL+PN
Sbjct: 64 RKQAIILAREIH-HHRRLLHPN 84
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/44 (20%), Positives = 26/44 (59%)
Frame = +3
Query: 177 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 308
+++ E++DD+ + + EDDV ++ + + +Q + K+++
Sbjct: 723 DDFENEESDDDKIFEQQTKIEDDVKNENKTEPVEEQKSEEKNEQ 766
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 225 PKPIHLHHQRLLYPNFPQEI 166
P P + H R++ PN P+EI
Sbjct: 23 PPPKEVLHTRVIVPNGPEEI 42
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 177 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 299
E E +DDE +S ++ ED+ I ++ N + R+ +K +
Sbjct: 279 EEEAEETSDDEPLSSEDEENEDEDITEESNLRKRKVSDKTR 319
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 24.2 bits (50), Expect = 9.8
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -3
Query: 212 IFIISVFCTPIFRRKFFELVILF*QT---KVYFLFVSHYTVMIIEIR 81
+F+++V P RRKFFE + T + FL H+ I+ ++
Sbjct: 195 LFLMTVASLPSVRRKFFEWFFVLHHTCSVLIIFLIWLHHPRTIVYMK 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,258,206
Number of Sequences: 5004
Number of extensions: 22418
Number of successful extensions: 88
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -