Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D03
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1186 - 9440805-9440938,9442890-9442986 53 1e-07
01_03_0048 + 11953517-11953681,11954603-11954669,11954894-11955024 49 2e-06
02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230 30 1.0
07_03_1325 + 25830838-25831440 29 1.8
06_01_0043 - 412675-412798,412891-412997,413104-413197,413733-41... 29 1.8
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 29 2.4
03_01_0184 - 1479520-1479649,1479889-1479938,1480519-1480683,148... 28 3.2
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967... 28 3.2
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 27 5.6
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504... 27 5.6
04_04_1689 + 35379627-35379746,35379823-35380344,35380428-353805... 27 5.6
03_01_0251 - 1956985-1957058,1957238-1957361,1957646-1957744,195... 27 5.6
11_08_0021 + 27716298-27716478,27717137-27717309,27717408-277175... 27 7.3
09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444 27 9.7
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200... 27 9.7
>01_01_1186 - 9440805-9440938,9442890-9442986
Length = 76
Score = 52.8 bits (121), Expect = 1e-07
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +3
Query: 177 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 308
+ W ++ DE + WED+W+DD + DDF+ QLR++LE+ QK
Sbjct: 32 QEWDDKEDGDEAIQQWEDDWDDDDVNDDFSLQLRKELEECNTQK 75
>01_03_0048 + 11953517-11953681,11954603-11954669,11954894-11955024
Length = 120
Score = 49.2 bits (112), Expect = 2e-06
Identities = 17/41 (41%), Positives = 29/41 (70%)
Frame = +3
Query: 174 AENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKL 296
++ W ++ +E V WED+W+DD + DDF+ QLR++LE +
Sbjct: 76 SDEWDDKEEGNEAVQQWEDDWDDDDVNDDFSLQLRKELESI 116
>02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230
Length = 171
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 174 AENWGTEDADDEDVSVWEDNWEDD 245
AEN G +DA DED S E N ED+
Sbjct: 83 AENQGDDDAGDEDASEEEGNDEDE 106
>07_03_1325 + 25830838-25831440
Length = 200
Score = 29.1 bits (62), Expect = 1.8
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +3
Query: 192 EDADDEDVSVWEDNWEDDVIQD 257
+DAD+ED+ W++++ D++ QD
Sbjct: 114 DDADEEDLKEWDEDFVDELDQD 135
>06_01_0043 -
412675-412798,412891-412997,413104-413197,413733-413820,
413902-413943,414117-414223,414812-414942
Length = 230
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 195 DADDEDVSVWEDNWED-DVIQDDFNQQLRQQLEKLKDQKS 311
DADD DV D+ D D DD + L +LE++K +++
Sbjct: 109 DADDSDVEPRSDDESDEDDDDDDDTEALMAELERIKKERA 148
>11_01_0219 -
1710206-1710246,1710479-1710620,1710699-1710752,
1710838-1710909,1711631-1711699,1711807-1711848,
1711946-1712014,1712130-1712267,1712390-1712500,
1712576-1712726,1713720-1713775,1714076-1714753
Length = 540
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 177 ENWGTEDADDEDVSVWEDNWEDD 245
ENW ED+D ED +++ EDD
Sbjct: 199 ENWMEEDSDSEDEEYLDEDEEDD 221
>03_01_0184 -
1479520-1479649,1479889-1479938,1480519-1480683,
1481287-1481339,1481805-1481934,1482189-1482266,
1482583-1482642,1483428-1483480,1483574-1483895
Length = 346
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 225 PKPIHLHHQRLLYPNFPQEILRTRHPLLANQGLLSVCQPLYC 100
P+ +H H +R P Q TR LL +G S +PLYC
Sbjct: 11 PRLLHRHRRREAKP---QRRSATRVSLLPRRGAASARRPLYC 49
>01_03_0284 -
14595643-14595663,14595978-14596018,14596379-14596732,
14597023-14597494,14597524-14600001
Length = 1121
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = -2
Query: 228 LPKPIHLHHQRLLYPNFPQEILRTRHPLLANQGL----LSVCQPLYC 100
L +P HLHH R L + Q ++R + L LS C PL C
Sbjct: 590 LIQPKHLHHLRYLNLTYSQNMVRLPEEISILYNLQTLDLSACWPLRC 636
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 177 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 308
ENW ED+D+E+ ED ED+ +D+ + LE D++
Sbjct: 205 ENWMEEDSDEEEE---EDLDEDEDNEDEEDDDEHLDLEDFDDEE 245
>06_01_0692 -
5047162-5047441,5047602-5047726,5048257-5048327,
5048453-5048834,5049389-5050126
Length = 531
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 174 AENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKL 296
+E+ + ++DDE W DD+I D +++ Q+ E+L
Sbjct: 64 SESSKSNNSDDEAHQFWRKQLPDDIIPDFSFEKIEQEPEEL 104
>04_04_1689 +
35379627-35379746,35379823-35380344,35380428-35380526,
35380608-35380979
Length = 370
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 183 WGTEDADDEDVSVWEDNWEDD 245
WGT+D DD+ E++ EDD
Sbjct: 328 WGTDDDDDDQQPAEEEDEEDD 348
>03_01_0251 -
1956985-1957058,1957238-1957361,1957646-1957744,
1957821-1957919,1958097-1958195,1958306-1958404,
1958744-1958820,1959232-1959952
Length = 463
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 228 LPKPIHLHHQRLLYPNFPQEILRTRHPLLANQGL 127
+P + LHH LL+P FP + +T +PL A+ L
Sbjct: 1 MPPSLSLHHHLLLFP-FPSHV-QTLNPLSASPRL 32
>11_08_0021 + 27716298-27716478,27717137-27717309,27717408-27717578,
27717967-27718077,27718168-27718245,27718642-27718832,
27718873-27718958,27719202-27719206,27719301-27719378,
27719465-27719527,27719597-27719680,27720049-27720209,
27720377-27720416,27720774-27720893,27720993-27721211,
27721927-27722100,27722202-27722883,27722986-27723185,
27723269-27723407,27723502-27723677
Length = 1043
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 186 GTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 293
G ED DD+D ED EDD DD + +R++ E+
Sbjct: 920 GAEDLDDDDEEE-EDTDEDDEDSDD-DDDVREETEE 953
>09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444
Length = 171
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 186 GTEDADDEDVSVWEDNWEDDVIQDDFNQQ 272
G++D DD+D +++ EDD +DD +++
Sbjct: 129 GSDDEDDDDDDGGDEDGEDDDDEDDDDEE 157
>04_01_0178 +
2006369-2006494,2006582-2006664,2007693-2007819,
2008579-2008638,2009606-2009735,2009821-2010047,
2010226-2010318,2010395-2010466,2011392-2011532,
2012045-2012047,2012387-2012443,2012909-2012995,
2013081-2013116
Length = 413
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 192 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 311
E E WE +W D Q D ++L QL+ K K+
Sbjct: 176 EPIGGEITIAWESSWMDKAPQTDMERRLMDQLKDGKFAKN 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,601,019
Number of Sequences: 37544
Number of extensions: 138270
Number of successful extensions: 487
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -