Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D03
(463 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006714-3|AAK29724.3| 82|Caenorhabditis elegans Hypothetical ... 50 1e-06
Z75710-9|CAB00024.2| 752|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical p... 27 4.9
Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical pr... 27 4.9
AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical... 27 4.9
AF039053-11|AAC25879.1| 301|Caenorhabditis elegans Serpentine r... 27 4.9
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 27 6.5
Z81135-3|CAB03456.1| 251|Caenorhabditis elegans Hypothetical pr... 27 8.6
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr... 27 8.6
U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical p... 27 8.6
>AC006714-3|AAK29724.3| 82|Caenorhabditis elegans Hypothetical
protein Y119D3B.15 protein.
Length = 82
Score = 49.6 bits (113), Expect = 1e-06
Identities = 16/42 (38%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +3
Query: 171 PAENWGTE-DADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 293
P + W + +++DV+VWEDNW+D+ + +F++QL+++L K
Sbjct: 35 PVQEWAERAEGEEDDVNVWEDNWDDETHESEFSKQLKEELRK 76
>Z75710-9|CAB00024.2| 752|Caenorhabditis elegans Hypothetical
protein D1081.3 protein.
Length = 752
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 192 EDADDEDVSVWEDNWEDDVIQDDF 263
+D DDED +ED+ E+DVI D++
Sbjct: 718 DDDDDEDCDDFEDD-EEDVIDDEY 740
>Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical
protein R11A5.1b protein.
Length = 896
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 192 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 308
ED DDED ED E+D ++D ++ + E+ +D +
Sbjct: 576 EDDDDEDEEEDEDEEEEDEDEEDEEEEENESEEEEEDDE 614
>Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical
protein R11A5.1a protein.
Length = 906
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 192 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 308
ED DDED ED E+D ++D ++ + E+ +D +
Sbjct: 586 EDDDDEDEEEDEDEEEEDEDEEDEEEEENESEEEEEDDE 624
>AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical
protein Y54G11A.14 protein.
Length = 450
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 192 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLE 290
+D ++ED ED ED+ D+ N++++++ E
Sbjct: 59 DDEEEEDEDEEEDEAEDEAEDDEENEEVKEEKE 91
>AF039053-11|AAC25879.1| 301|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 19 protein.
Length = 301
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 131 VYFLFVSHYTVMIIEIRKYHLL 66
VY LFV Y+++ E+RKYH L
Sbjct: 63 VYLLFVIAYSLIPEELRKYHNL 84
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 171 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQ-QLEKLKDQK 308
P E E D+E+ ED ED+ +++D ++ QLE K++K
Sbjct: 165 PEEEESVEGEDEEESQEVEDLKEDEKMEEDEKEEEEDVQLESEKNEK 211
>Z81135-3|CAB03456.1| 251|Caenorhabditis elegans Hypothetical
protein W01G7.4 protein.
Length = 251
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 198 ADDEDVSVWEDNWEDD 245
ADDED S EDNW +D
Sbjct: 171 ADDEDDSNDEDNWRND 186
>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
protein K07E3.1 protein.
Length = 1061
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 228 DNWEDDVIQDDFNQQLRQQLEKLKDQK 308
D +DDV DD + + R+Q +LK QK
Sbjct: 664 DEEDDDVASDDPDAEKRRQKRRLKRQK 690
>U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical
protein T02G5.12 protein.
Length = 556
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 201 DDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKL 296
DD+D + D +ED+V + D+N++ +++ L
Sbjct: 190 DDDDDGEYNDVFEDEVKKIDYNKRFEEKVSLL 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,033,972
Number of Sequences: 27780
Number of extensions: 130779
Number of successful extensions: 506
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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