Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D02
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 191 8e-50
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 49 7e-07
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 46 8e-06
SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyce... 33 0.061
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 29 0.75
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 29 0.75
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 28 1.7
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 27 2.3
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 4.0
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 26 7.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 7.0
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 9.2
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 25 9.2
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 25 9.2
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 25 9.2
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 191 bits (466), Expect = 8e-50
Identities = 100/238 (42%), Positives = 146/238 (61%), Gaps = 10/238 (4%)
Frame = +3
Query: 45 VKLTTELIQNSMQYMNPCRDRELDLRGYKIPQIENLGATLDQFDTIDFSDNDIRKLDGFP 224
++L E + +++P ++ ELDLR Y+IP IENLG D D IDF+DNDIR L FP
Sbjct: 1 MRLNAEFLSQVPSFISPLKETELDLRWYQIPIIENLGVLRDVHDAIDFTDNDIRYLGNFP 60
Query: 225 LLKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNNNISELGDLDPLSTLPKLRTLSLM 404
+KRL+ +L NNRI I ++ +PNL+++ L N++ E+ DLDPL++ P+L LS +
Sbjct: 61 RMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEIADLDPLASCPQLTNLSCI 120
Query: 405 HNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALF-KSRKGKEIQREI-AKKAK 578
NPVA K +YR Y+ +++P L +LDF ++++ ER A +F + + EI I K++
Sbjct: 121 DNPVAQKQYYRLYLIWRIPSLHILDFERVRRNERLRAEEVFGQIQNPTEIASSIMGVKSR 180
Query: 579 TF--------VPGGNMPDPKVTNLTPQEIHKIREAIKNASSLQEVERLTRMLQSGQIP 728
F P N P LTP+E KI+EAIKNASS+ E+ RL ML G+IP
Sbjct: 181 VFDLAALVQSHPEANSPITTGYTLTPEEREKIKEAIKNASSIAEINRLEAMLLEGKIP 238
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 49.2 bits (112), Expect = 7e-07
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Frame = +3
Query: 111 LDLRGYKIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENL 290
L ++ +I Q ENL + S N + G +L+ L+ + ++NN I + +
Sbjct: 197 LSIQSNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHL--SY 254
Query: 291 EHYIPNLESVILTNNNISELGDL-DPLSTLPKLRTLSLMHNPVANKNH--YRAYVAFKMP 461
+ NL + +NN +S ++ D LS L KL T+ NP+ N YR V +P
Sbjct: 255 LAGLKNLVELWASNNELSSFQEIEDELSGLKKLETVYFEGNPLQKTNPAVYRNKVRLCLP 314
Query: 462 ELRLLD 479
+LR +D
Sbjct: 315 QLRQID 320
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 45.6 bits (103), Expect = 8e-06
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Frame = +3
Query: 255 NNNRIVRIGENLEHYIPNLESVILTNNNISELGDLDPLS---TLPKLRTLSLMHNPV--- 416
NN + V L P L ++ L NN I+ L DLDP S LP+L+ L L+ NP+
Sbjct: 224 NNLQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWSPKTKLPELQELVLVGNPIVTT 283
Query: 417 -ANK-NHYRAYVAFKMPELRLLDFRKIKQK 500
AN+ Y+ + + P+LRLLD I +
Sbjct: 284 FANRAMDYQREMVSRFPKLRLLDGNSINSE 313
>SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 219
Score = 32.7 bits (71), Expect = 0.061
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 621 NLTPQEIHKIREAIKNASSLQEVERLTRMLQSGQIP 728
N+ P E H IR+ + + +++ E L + L+S QIP
Sbjct: 20 NVGPDEDHNIRDPVLTSEGIEQCEALAKELESKQIP 55
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 29.1 bits (62), Expect = 0.75
Identities = 19/89 (21%), Positives = 44/89 (49%)
Frame = +3
Query: 129 KIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENLEHYIPN 308
+I ++ + L + + + +N+I +++ L+ L + L+NN++ + + +
Sbjct: 723 RIKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNL--KASQPMIH 780
Query: 309 LESVILTNNNISELGDLDPLSTLPKLRTL 395
L + ++NN I +L + P LRTL
Sbjct: 781 LRILRISNNAIHQL----EVDQFPHLRTL 805
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 29.1 bits (62), Expect = 0.75
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 255 NNNRIVRIGENLEHYIPNLE-SVILTNNNISELGDLDPLSTLPKLRTLSLMHNPVANKNH 431
NN + I E +I N S T++N+S G L P T R L+ + NP N++H
Sbjct: 511 NNLPSLAISPVSEGFIQNATISTPSTSSNLSIAGSLTPSKTSRIYRGLAPLKNPEFNEDH 570
Query: 432 YR 437
+
Sbjct: 571 VK 572
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +3
Query: 126 YKIPQIENLGATLDQFDT-IDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENLEHYI 302
+K+P I + G+ T ++ +D D R + LL + + + E
Sbjct: 241 HKLPVIASTGSACKSDPTRVNIADISATSEDPLSRATRRRLRLLGIMEGIPVVFSTEKPD 300
Query: 303 PNLESVILTNNNISELGDLDPLSTLPKLR 389
P S++ + E GD+D LS LP+ R
Sbjct: 301 PRKASLLPLSEEEFEKGDVDELSALPEFR 329
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +3
Query: 165 DQFDTIDFSDNDIRK--LDGFPLLKRLKCILLNNNRIVRIGE 284
DQ I +S ++ + ++GFPL+KR LN +I++I E
Sbjct: 4 DQIHKITYSGVEVFEYTINGFPLMKRCHDNWLNATQILKIAE 45
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +3
Query: 348 LGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALF 527
L D D L ++ + + + P V +++PE+ +K +++++D+ A
Sbjct: 21 LDDFDGFMGLEEIEGVDIKYQPKGAMKE----VIYELPEVHEKKDKKPEKRKKDQKEASE 76
Query: 528 KSRKGK 545
K +KGK
Sbjct: 77 KKKKGK 82
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 659 NQECIIPTGGRTSDQNVAVWSDSRTKTFTACDT 757
+Q I+ +GG T+D+ + +W+ R DT
Sbjct: 427 HQRGILASGGGTADRTIKLWNTQRGSMLHNIDT 459
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 309 NLVYNVPNSLLSSRSCYYSIEYISTFLAVENRQAF 205
+L YN+P+ L+ SC I+ I+ L +++ Q+F
Sbjct: 744 HLGYNIPSQLMELASCLQRIQLIAMCL-IDSVQSF 777
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = +3
Query: 378 PKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIK--QKERDEANALFKSRKGKEI 551
PKLR + R Y P++ +D IK ++ER + K + +
Sbjct: 321 PKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKAQEEERKRQAEIEKEIRQSRL 380
Query: 552 QREIAKKAK 578
Q E KK K
Sbjct: 381 QEEERKKKK 389
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 203 DIVVREVYRIKLIERSTQIFDLWNLITSKIQFSVP 99
+I +VYRIK ++R DL N +T F VP
Sbjct: 97 NIQTEKVYRIKPVQRVLSPSDLTNELTILDLFHVP 131
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 648 IREAIKNASSLQEVERLTRML 710
IRE I +SLQEVE +T+ L
Sbjct: 139 IRERIDQVASLQEVESVTQAL 159
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 90 NPCRDRELDLRGYKIPQ-IENLGATLDQFDTIDFSD 194
NPC LDL G ++ + ++ G T QF+TI SD
Sbjct: 82 NPCNMHLLDL-GRRVKEGVKKAGLTGFQFNTIGVSD 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,285,811
Number of Sequences: 5004
Number of extensions: 70310
Number of successful extensions: 242
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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