Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D02
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    32   0.005
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   1.0  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   2.4  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   4.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.2  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   4.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 32.3 bits (70), Expect = 0.005
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = +3

Query: 96  CRD-RELDLRGYKIPQIENLGATLDQFDTIDFSDNDIRKL--DGFPLLKRLKCILLNNNR 266
           C D +ELDL G ++  + +    L    T+D  +N I       F  L +L  + L  N 
Sbjct: 430 CSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGND 489

Query: 267 IVRIGENLEHYIPNLESVILTNNNISEL 350
           I  +   +   +PNL+ + L  N +  +
Sbjct: 490 IGNLSRGMLWDLPNLQILNLARNKVQHV 517



 Score = 26.2 bits (55), Expect = 0.34
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +3

Query: 111 LDLRGYKIPQIENLGATLD-QFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGEN 287
           LD+ G  I  + N     D +  T+D S N I +L    +   ++ + +NNN I  +  N
Sbjct: 576 LDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPLSVPDSVELLFINNNYINLVRPN 635

Query: 288 LEHYIPNLESVILTNNNISEL 350
                 NL  V +  N I  +
Sbjct: 636 TFTDKVNLTRVDMYANMIETM 656



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +3

Query: 213 DGFPLLKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNNNISELGDL 359
           D F  L+ L  + +  + +  +  N    + NL+++ LT N + ++ D+
Sbjct: 141 DSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDI 189


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 513 ANALFKSRKGKEIQREIAKKAKTFVPGGN 599
           +NAL++    +++Q+++ ++  TF P  N
Sbjct: 314 SNALYELALNQDVQKKLREEINTFCPKNN 342


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 440 ICGIQNARAKIIGLQED 490
           +CG+QN RA+ + + +D
Sbjct: 14  MCGVQNLRARSVNIFQD 30


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 288 LEHYIPNLESVILT 329
           LE YIP +ESV+ T
Sbjct: 101 LEEYIPRVESVVET 114


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 43  WSNLQRSSYKTLCNI*ILVGTENWILEVIRFHKSK 147
           +S LQR+ Y T  ++ I   TE    E++  HK +
Sbjct: 123 FSTLQRAEYPTNRSLFIREQTEEMYREMLLEHKKR 157


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 288 LEHYIPNLESVILT 329
           LE YIP +ESV+ T
Sbjct: 75  LEEYIPRVESVVET 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,778
Number of Sequences: 438
Number of extensions: 4996
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)