Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D02
(779 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09760.1 68414.m01095 U2 small nuclear ribonucleoprotein A, p... 225 2e-59
At3g50690.1 68416.m05546 leucine-rich repeat family protein 47 1e-05
At4g03260.1 68417.m00445 leucine-rich repeat family protein cont... 44 1e-04
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont... 42 3e-04
At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferlin... 41 8e-04
At1g48540.2 68414.m05428 leucine-rich repeat family protein 41 8e-04
At1g48540.1 68414.m05427 leucine-rich repeat family protein 41 8e-04
At1g04210.1 68414.m00411 leucine-rich repeat family protein / pr... 40 0.002
At4g34280.1 68417.m04873 transducin family protein / WD-40 repea... 39 0.004
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont... 39 0.004
At1g47890.1 68414.m05333 disease resistance family protein conta... 38 0.006
At1g78230.1 68414.m09116 leucine-rich repeat family protein 38 0.007
At5g22320.1 68418.m02604 leucine-rich repeat family protein cont... 37 0.017
At1g72180.1 68414.m08346 leucine-rich repeat transmembrane prote... 34 0.092
At2g33080.1 68415.m04056 leucine-rich repeat family protein cont... 33 0.16
At2g26330.1 68415.m03159 leucine-rich repeat protein kinase, put... 33 0.28
At3g23010.1 68416.m02901 disease resistance family protein / LRR... 31 1.1
At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni... 30 1.5
At5g20690.1 68418.m02457 leucine-rich repeat transmembrane prote... 30 2.0
At4g37810.1 68417.m05350 expressed protein 30 2.0
At5g04890.1 68418.m00513 small heat shock-like protein (RTM2) si... 29 3.5
At4g27890.1 68417.m04003 nuclear movement family protein contain... 29 3.5
At3g05660.1 68416.m00630 disease resistance family protein conta... 29 3.5
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ... 29 4.6
At4g14605.1 68417.m02247 mitochondrial transcription termination... 29 4.6
At4g04220.1 68417.m00598 disease resistance family protein conta... 29 4.6
At2g32680.1 68415.m03995 disease resistance family protein conta... 29 4.6
At1g72460.1 68414.m08379 leucine-rich repeat transmembrane prote... 29 4.6
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 28 6.0
At3g42880.1 68416.m04495 leucine-rich repeat transmembrane prote... 28 6.0
At3g06060.1 68416.m00693 short-chain dehydrogenase/reductase (SD... 28 6.0
At2g46490.1 68415.m05786 expressed protein (APS2) identical to c... 28 6.0
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 28 6.0
At1g02290.1 68414.m00171 expressed protein 28 6.0
At5g01690.1 68418.m00086 cation/hydrogen exchanger, putative (CH... 28 8.0
At4g24760.1 68417.m03545 expressed protein 28 8.0
At3g20190.1 68416.m02559 leucine-rich repeat transmembrane prote... 28 8.0
At1g74180.1 68414.m08591 leucine-rich repeat family protein cont... 28 8.0
At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3... 28 8.0
At1g56660.1 68414.m06516 expressed protein 28 8.0
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 28 8.0
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 28 8.0
>At1g09760.1 68414.m01095 U2 small nuclear ribonucleoprotein A,
putative identical to U2 small nuclear ribonucleoprotein
A' (U2 snRNP-A') [Arabidopsis thaliana]
SWISS-PROT:P43333; supported by
cDNA:gi_16649064_gb_AY059902.1_
Length = 249
Score = 225 bits (551), Expect = 2e-59
Identities = 117/249 (46%), Positives = 164/249 (65%), Gaps = 3/249 (1%)
Frame = +3
Query: 42 MVKLTTELIQNSMQYMNPCRDRELDLRGYKIPQIENLGATLDQFDTIDFSDNDIRKLDGF 221
MVKLT +LI S + N ++RELDLRG KIP IENLGAT DQFDTID SDN+I KL+ F
Sbjct: 1 MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60
Query: 222 PLLKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNNNISELGDLDPLSTLPKLRTLSL 401
P L RL +L+NNNRI RI NL ++P L S++LTNN + L ++DPL+++PKL+ LSL
Sbjct: 61 PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120
Query: 402 MHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALFKSRKGKEIQREIAKK--A 575
+ N + K +YR YV K+ LR+LDF KIK KER EA +LF S++ +E ++++++
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSREEVK 180
Query: 576 KTFVPGGNMPDPKVTNLTPQEIHKIREAIKNASSLQEVERLTRMLQSGQIP-GQKPLQPV 752
K N PKV T ++I I+ AI N+ +++E+ RL + L+ GQ+P G P
Sbjct: 181 KVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGLIIPDPA 240
Query: 753 TQTNGQXDE 779
T + +E
Sbjct: 241 TNDSAPMEE 249
>At3g50690.1 68416.m05546 leucine-rich repeat family protein
Length = 447
Score = 47.2 bits (107), Expect = 1e-05
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +3
Query: 201 IRKLDGFPLLKRLKCILLNNNRI-VRIGENLEHYIPNLESVILTNNNISELGDLDPLSTL 377
+ L+ FP L L+ ++L++NRI V + +E + + + L+NN I + DL PL+ L
Sbjct: 60 VSSLEQFPRLGNLQKLILSDNRITVGLEFLVEAGLDSFCDLDLSNNRIQFVEDLAPLAEL 119
Query: 378 PKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEAN 518
KL +L L PV YR+ V + L+ LD + ER E++
Sbjct: 120 -KLVSLDLYECPVTRLKDYRSRVFGLIKTLKYLDKTDAEGNERPESD 165
>At4g03260.1 68417.m00445 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 677
Score = 44.0 bits (99), Expect = 1e-04
Identities = 35/102 (34%), Positives = 51/102 (50%)
Frame = +3
Query: 105 RELDLRGYKIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGE 284
R L+L G I +I GA ++ S N I ++G L RL+ + L+ NRI+R+G
Sbjct: 422 RVLNLSGNAIVRI-TAGALPRGLHALNLSKNSISVIEGLRELTRLRVLDLSYNRILRLGH 480
Query: 285 NLEHYIPNLESVILTNNNISELGDLDPLSTLPKLRTLSLMHN 410
L +L+ + L N ISE ++ L L KL L L N
Sbjct: 481 GLAS-CSSLKELYLAGNKISE---IEGLHRLLKLTVLDLRFN 518
>At2g34680.1 68415.m04260 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; identical to cDNA hypothetical protein
(AIR9) mRNA, partial cds GI:3695020
Length = 1661
Score = 42.3 bits (95), Expect = 3e-04
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Frame = +3
Query: 102 DRELDLRGYKIPQIENLGATLD-QFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRI 278
D LDLRG++I + + G L + + DN + L+G +L R+K + L+ N
Sbjct: 270 DMRLDLRGHRIRSLTSGGLHLSPNLEFVYLRDNLLSTLEGIEILNRVKVLDLSFNDFKGP 329
Query: 279 G-ENLEHYIPNLESVILTNNNISELGDLDPLSTLPKLRTLSLMHN-----PVANKNHYRA 440
G E LE+ L+ + L N I+ L L LP L LS+ N +A++ +
Sbjct: 330 GFEPLEN-CKMLQQLYLAGNQITSLAS---LPQLPNLEFLSVAQNKLKSLAMASQPRLQV 385
Query: 441 YVAFKMPELRLLDFRKIKQKE--RDEANALFK 530
A K L DF + E R E N L K
Sbjct: 386 LAASKNKITTLKDFPYLPVLEHLRVEENPLLK 417
>At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferling
(PFI) almost identical to tubulin folding cofactor E
(Pfifferling; PFI) GI:20514267 from [Arabidopsis
thaliana]; identical to cDNA tubulin folding cofactor E,
GI:20514266
Length = 531
Score = 41.1 bits (92), Expect = 8e-04
Identities = 37/155 (23%), Positives = 77/155 (49%), Gaps = 19/155 (12%)
Frame = +3
Query: 108 ELDLRGYKIPQIENLGATLDQ-FDTI---DFSDNDIRKLDGFPLLKRLKCI---LLNNNR 266
EL L G I I + ++ DQ F+++ + DN I L +L C+ LN N+
Sbjct: 238 ELHLMGNMISTITSTSSSDDQAFNSLRLLNLDDNCISDWSEVLKLSQLPCLEQLYLNKNK 297
Query: 267 IVRIGENLEHY---------IPNLESVILTNNNISELGDLDPLSTLPKLRTLSLMHNPVA 419
+ RI +++ P+L ++L NNI +L +D L+ P+L + L NP++
Sbjct: 298 LSRIFQSVNGTESSEKGSDPFPSLSCLLLGANNIGDLASVDALNGFPQLVDIRLSENPIS 357
Query: 420 NK---NHYRAYVAFKMPELRLLDFRKIKQKERDEA 515
+ R + ++ ++++L+ +++ +E+ ++
Sbjct: 358 DPVRGGVPRFVLVARLTKVQVLNGSEVRAREKKDS 392
>At1g48540.2 68414.m05428 leucine-rich repeat family protein
Length = 1051
Score = 41.1 bits (92), Expect = 8e-04
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Frame = +3
Query: 63 LIQNSMQYMNPCRDRELDLRGYKIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLK-RL 239
L+ S+Q + P + LDL K +++NL + +D N +R + + L
Sbjct: 182 LMDESLQLL-PAAE-SLDLSRNKFVKVDNL-RRCTKLKHLDLGFNHLRTVSYLSQVSCHL 238
Query: 240 KCILLNNNRIVRIGENLEHYIPNLESVILTNNNISELGDLDPLSTLPKLRTLSLMHNPVA 419
++L NN + + +E+ + +L+ + ++ N IS +L+ L +L +L+ L L NPV
Sbjct: 239 VKLVLRNNALTTL-RGIEN-LKSLQGLDVSYNIISNFSELEFLWSLSQLKELWLEGNPVC 296
Query: 420 NKNHYRAYV--AFKMPELRLLDFRKIKQKE 503
YRA+V +P+ LD ++I +E
Sbjct: 297 CARWYRAHVFSYVALPDELKLDGKQIGTRE 326
>At1g48540.1 68414.m05427 leucine-rich repeat family protein
Length = 1063
Score = 41.1 bits (92), Expect = 8e-04
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Frame = +3
Query: 63 LIQNSMQYMNPCRDRELDLRGYKIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLK-RL 239
L+ S+Q + P + LDL K +++NL + +D N +R + + L
Sbjct: 182 LMDESLQLL-PAAE-SLDLSRNKFVKVDNL-RRCTKLKHLDLGFNHLRTVSYLSQVSCHL 238
Query: 240 KCILLNNNRIVRIGENLEHYIPNLESVILTNNNISELGDLDPLSTLPKLRTLSLMHNPVA 419
++L NN + + +E+ + +L+ + ++ N IS +L+ L +L +L+ L L NPV
Sbjct: 239 VKLVLRNNALTTL-RGIEN-LKSLQGLDVSYNIISNFSELEFLWSLSQLKELWLEGNPVC 296
Query: 420 NKNHYRAYV--AFKMPELRLLDFRKIKQKE 503
YRA+V +P+ LD ++I +E
Sbjct: 297 CARWYRAHVFSYVALPDELKLDGKQIGTRE 326
>At1g04210.1 68414.m00411 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1112
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +3
Query: 162 LDQFDTIDFSDNDIRKLDG-FPLLKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNNN 338
L + +D S N I+ L L L + + +NR++ + L + NLES+ ++NN
Sbjct: 175 LKSLEYLDLSFNKIKSLPNEIGYLSSLTFLKVAHNRLMELSPVLA-LLQNLESLDVSNNR 233
Query: 339 ISELGDLDPLSTLPKLRTLSLMHN 410
++ L LD L+ +P+L+ L+L +N
Sbjct: 234 LTTLHPLD-LNLMPRLQILNLRYN 256
>At4g34280.1 68417.m04873 transducin family protein / WD-40 repeat
family protein similar to TUPA (GI:11066216) [Emericella
nidulans]; similar to damage-specific DNA binding
protein 2, Homo sapiens ,PIR2:I38909; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies,1
weak)|19797453|gb|AU229277.1|AU229277
Length = 783
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = +3
Query: 384 LRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEA 515
L+ +S +P+ ++ HYR Y+ +P+L++LD I++ +RD+A
Sbjct: 324 LKYISSKASPICSEKHYRMYMINSLPKLQVLDNLAIRKSDRDKA 367
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 201 IRKLDGFPLLKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNNNISEL-GDLDPLSTL 377
I KL+ +L ++L+ NRIV GE+ +P L + + + +S+L L L
Sbjct: 138 IHKLNIVGEFTQLHTLILDKNRIVGFGEDCFSCMPKLTYLSMCDTLVSDLWTSAAALLKL 197
Query: 378 PKLRTL 395
P L+ L
Sbjct: 198 PSLKEL 203
>At3g17920.1 68416.m02282 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 962
Score = 38.7 bits (86), Expect = 0.004
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Frame = +3
Query: 63 LIQNSMQYMNPCRDRELDLRGYKIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLK 242
L+ S+Q + P + LDL K +++NL ++ +D N +RK+ + + +
Sbjct: 182 LMDESLQLL-PAVE-SLDLSRNKFAKVDNL-RRCNKLKHLDLGFNQLRKISHLSEVGKFR 238
Query: 243 CILLNNNRIVRIGENLEHYIPNLESVILTNNNISELGDLDPLSTLPKLRTLSLMHNPVAN 422
L R + ENL+ +LE + ++ N IS+ +L+ L +L L L L NP+
Sbjct: 239 NNALTTLRGI---ENLK----SLEGLDVSFNLISDFSELEFLGSLSFLTDLWLEGNPICC 291
Query: 423 KNHYRAYVA--FKMPELRLLDFRKIKQKERDEANALFKSRKGK 545
YRA+V +P LD + I +E + + RK +
Sbjct: 292 ARWYRAHVLSYVYLPNDLKLDGKHIGNREFWKRQVVVTRRKSQ 334
>At1g47890.1 68414.m05333 disease resistance family protein contains
leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1019
Score = 38.3 bits (85), Expect = 0.006
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Frame = +3
Query: 171 FDTIDFSDNDIR-KL-DGFPLLKRLKCILLNNNRIV-RIGENLEHYIPNLESVILTNNNI 341
+ ID S N + K+ D LLK L+ + +++N I +L + + NLES+ ++ NNI
Sbjct: 833 YTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLAN-LKNLESLDISQNNI 891
Query: 342 SELGDLDP-LSTLPKLRTLSLMHN 410
S G++ P L TL L +++ HN
Sbjct: 892 S--GEIPPELGTLSSLAWINVSHN 913
>At1g78230.1 68414.m09116 leucine-rich repeat family protein
Length = 676
Score = 37.9 bits (84), Expect = 0.007
Identities = 27/80 (33%), Positives = 43/80 (53%)
Frame = +3
Query: 180 IDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNNNISELGDL 359
++ S N I ++G L RL+ + L+ NRI RIG+ L + ++ + L N IS ++
Sbjct: 473 LNLSKNKISVIEGLRDLTRLRVLDLSYNRISRIGQGLSN-CTLIKELYLAGNKIS---NV 528
Query: 360 DPLSTLPKLRTLSLMHNPVA 419
+ L L KL L L N +A
Sbjct: 529 EGLHRLLKLIVLDLSFNKIA 548
>At5g22320.1 68418.m02604 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 452
Score = 36.7 bits (81), Expect = 0.017
Identities = 23/76 (30%), Positives = 40/76 (52%)
Frame = +3
Query: 189 SDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNNNISELGDLDPL 368
+DN+I + LLK L ++L+ N I IG++L + NL + L++ I +G L
Sbjct: 115 NDNEISSICKLDLLKDLNSLVLSRNPISEIGDSLSK-LKNLSKISLSDCRIKAIG--SSL 171
Query: 369 STLPKLRTLSLMHNPV 416
+ L+ L L +N +
Sbjct: 172 KSCSDLKELRLANNEI 187
>At1g72180.1 68414.m08346 leucine-rich repeat transmembrane protein
kinase, putative similar to GI:3641252 from [Malus x
domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999))
Length = 977
Score = 34.3 bits (75), Expect = 0.092
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Frame = +3
Query: 180 IDFSDNDI--RKLDGFPLLKRLKCILLNNNRIV-RIGENLEHYIPNLESVILTNNNIS-- 344
ID SDN++ L L ++L NNR +I L + N+E + L+NNN+S
Sbjct: 415 IDLSDNELTGEVSPQIGLSTELSQLILQNNRFSGKIPRELGR-LTNIERIYLSNNNLSGE 473
Query: 345 ---ELGDLDPLSTL 377
E+GDL LS+L
Sbjct: 474 IPMEVGDLKELSSL 487
>At2g33080.1 68415.m04056 leucine-rich repeat family protein
contains leucine rich-repeat domain Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 740
Score = 33.5 bits (73), Expect = 0.16
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Frame = +3
Query: 162 LDQFDTIDFSDNDIRKL--DGFPLLKRLKCILLNNNRIV-RIGENLEHYIPNLESVILTN 332
L+ + IDFS N + LLK L + L+NN I +L + LES+ L+
Sbjct: 601 LNSYSAIDFSGNRLEGQIPKSIGLLKELIALNLSNNAFTCHIPLSLAN-ATELESLDLSR 659
Query: 333 NNISELGDL-DPLSTLPKLRTLSLMHNPVANKNH 431
N +S G + + L TL L +++ HN + +NH
Sbjct: 660 NQLS--GTIPNGLKTLSFLAYINVSHNKLKGENH 691
>At2g26330.1 68415.m03159 leucine-rich repeat protein kinase,
putative (ERECTA) identical to uncharacterized receptor
protein kinase ERECTA [Arabidopsis thaliana]
gi|1389566|dbj|BAA11869; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain
Length = 976
Score = 32.7 bits (71), Expect = 0.28
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +3
Query: 111 LDLRGYKIP-QIENLGATLDQFDTIDFSDNDIRKLDGFPL--LKRLKCILLNNNRIVRIG 281
+DLRG ++ QI + +D S N++ F + LK+L+ ++L NN+++
Sbjct: 97 IDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPI 156
Query: 282 ENLEHYIPNLESVILTNNNIS 344
+ IPNL+ + L N +S
Sbjct: 157 PSTLSQIPNLKILDLAQNKLS 177
>At3g23010.1 68416.m02901 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; contains similarity to
Cf-2.2 [Lycopersicon pimpinellifolium]
gi|1184077|gb|AAC15780
Length = 595
Score = 30.7 bits (66), Expect = 1.1
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Frame = +3
Query: 171 FDTIDFSDNDIR-KLDG-FPLLKRLKCILLNNNRIV-RIGENLEHYIPNLESVILTNNNI 341
F+ IDFS N + G LL L+ + L+ N I +L + I NLES+ L+ NN+
Sbjct: 430 FNAIDFSGNRFSGHIPGSIGLLSELRLLNLSGNAFTGNIPPSLAN-ITNLESLDLSRNNL 488
Query: 342 SELGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYV 446
S G++ P+S L LS + N + NH +
Sbjct: 489 S--GEI-PIS----LGKLSFLSNTNFSYNHLEGLI 516
>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
subunit-related / RAB geranylgeranyltransferase alpha
subunit-related low similarity to SP|Q08602 [Rattus
norvegicus]
Length = 683
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +3
Query: 180 IDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIG--ENLEHYIPNLESVILTNNNISE 347
+D S N++ +G ++ L C+ L++NRI ++L H + L+ + +++N+I +
Sbjct: 543 LDLSHNELHSTEGLEAMQLLSCLNLSHNRIRSFSALDSLRH-VKQLKVLDVSHNHIGK 599
>At5g20690.1 68418.m02457 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase PRK1,
tomato, PIR:T07865
Length = 659
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +3
Query: 210 LDGFPLLKRLKCILLNNNRIVRIGENLEHY--IPNLESVILTNNNIS-ELGDLDPLSTLP 380
+D L LK I L+NN + L H+ + L+S++L+NN+ S E+ D D +
Sbjct: 89 VDDLKDLPNLKTIRLDNNLL---SGPLPHFFKLRGLKSLMLSNNSFSGEIRD-DFFKDMS 144
Query: 381 KLRTLSLMHN 410
KL+ L L HN
Sbjct: 145 KLKRLFLDHN 154
>At4g37810.1 68417.m05350 expressed protein
Length = 128
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 292 SKFSPILTILLLFNRIHFNLFSSGKP 215
S S L ILL+ N HF+L ++G+P
Sbjct: 5 SNMSSFLLILLILNSTHFSLMANGRP 30
>At5g04890.1 68418.m00513 small heat shock-like protein (RTM2)
similar to 17.9 kDa heat-shock protein [Helianthus
annuus] GI:11990130; contains Pfam profile PF00011:
Hsp20/alpha crystallin family; supporting cDNA
gi|7407072|gb|AF208051.1|AF208051; identical to cDNA
small heat shock-like protein (RTM2) GI:7407072, small
heat shock-like protein [Arabidopsis thaliana]
GI:7407073
Length = 366
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +3
Query: 372 TLPKLRTLSLMHNPVANKNHYRAYV-AFKMPELRLLDFRKIKQKERDEANALFKS--RKG 542
T+PK + + P ++ A A K+ E RLL+ + K+KE +EA + K +
Sbjct: 100 TMPKETITKVAYLPETSRTEAAALEKAAKLEEKRLLEESRRKEKEEEEAKQMKKQLLEEK 159
Query: 543 KEIQREIAKKAK 578
+ + R++ ++AK
Sbjct: 160 EALIRKLQEEAK 171
>At4g27890.1 68417.m04003 nuclear movement family protein contains
Pfam profile: PF03593 nuclear movement protein
Length = 293
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +3
Query: 495 QKERDEANALFKSRKGKEIQREIAKKA--KTFVPGGNMPDPKVTNLTPQEIHKIREAIKN 668
+K+ E + K+ RE KK K V + PK +L P E+ K +E
Sbjct: 45 KKDTAEKEIVAAVMAAKQRLREAEKKKLEKESVKSMEVEKPKKDSLKPTELEKPKEESLM 104
Query: 669 ASSLQEVERLTRMLQSGQIPGQK 737
A+ E+E+ +SG I K
Sbjct: 105 ATDPMEIEKPKEEKESGPIVPNK 127
>At3g05660.1 68416.m00630 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 883
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +3
Query: 111 LDLRGYKIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRI--GE 284
L+L G I + ++ T Q T+D S+N I+ LL +L+ + ++NN +
Sbjct: 410 LNLSGCGITEFPDILRTQRQMRTLDISNNKIKGQVPSWLLLQLEYMHISNNNFIGFERST 469
Query: 285 NLEHYI---PNLESVILTNNNIS 344
LE + P+++ +NNN S
Sbjct: 470 KLEKTVVPKPSMKHFFGSNNNFS 492
>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 874
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 RLKCILLNNNRIVRIGENLEHYIPNLESVILT-NNNISELGDLDPLSTL 377
+L+ +LL +NR+ +I ++P L + L+ N N+ EL PL +L
Sbjct: 528 KLETLLLRDNRLRKISREFLSHVPILMVLDLSLNPNLIELPSFSPLYSL 576
>At4g14605.1 68417.m02247 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 444
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -3
Query: 324 KSQTLNLVYNVPNSLLSSRSCYYS-IEYIS-TFLAVENRQAF*YRCPRSLSYQIDRA*HP 151
K+Q ++ P L SR S +E++S T L E RCP +SY ++ P
Sbjct: 282 KNQWAKIISRFPAILTYSRQKLTSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVEDKLRP 341
Query: 150 DFRFVESYNL 121
+ S N+
Sbjct: 342 TMEYFRSLNV 351
>At4g04220.1 68417.m00598 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-2A [Lycopersicon
pimpinellifolium] gi|3894389|gb|AAC78594
Length = 811
Score = 28.7 bits (61), Expect = 4.6
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Frame = +3
Query: 162 LDQFDTIDFSDNDIRKL--DGFPLLKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNN 335
L + TID +N + D L L + L+ N++ + H + NLE++ L NN
Sbjct: 225 LTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGIPSSIHNLKNLETLQLENN 284
Query: 336 NISELGDLDP--LSTLPKLRTLSLM-HNPVANKNHYRAYVAFKMPELRL 473
N G++ L L KL+ L L +N + N+ + FK+ L L
Sbjct: 285 N-GLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNGYVFPQFKLTHLSL 332
>At2g32680.1 68415.m03995 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 890
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 306 NLESVILTNNNISELGDL-DPLSTLPKLRTLSLMHNPVANK 425
NLE V L NNN+ G + D L LRTL + HN + K
Sbjct: 529 NLELVYLRNNNLE--GSIPDALCDGASLRTLDVSHNRLTGK 567
>At1g72460.1 68414.m08379 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profiles: PF00560 leucine
rich repeat (5 copies), PF00069 eukaryotic protein
kinase domain
Length = 644
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 162 LDQFDTIDFSDNDIR-KLDGFPLLKRLKCILLNNNRIV-RIGENLEHYIPNLESVILTNN 335
L TI +N + F L LK + ++ NR I + + +L+ L+NN
Sbjct: 89 LPSLRTISIMNNSFSGDIPEFNRLTALKSLYISGNRFSGNIPSDYFETMVSLKKAWLSNN 148
Query: 336 NISELGDLDPLSTLPKLRTLSLMHN 410
+ S L + +TLP L L L +N
Sbjct: 149 HFSGLIPISLATTLPNLIELRLENN 173
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 354 DLDPLSTLPKLRTLSLMHN 410
D+ PL LP LRT+S+M+N
Sbjct: 82 DVAPLKDLPSLRTISIMNN 100
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +3
Query: 174 DTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNNNISELG 353
+ +D ++ND R+ +++ L L N+N + + +N+++ + L S T + +SEL
Sbjct: 1183 NNVDEANNDARRQSFQDVVEYLATELFNSNASITVRKNVQNCLALLAS--RTGSEVSEL- 1239
Query: 354 DLDPL 368
L+PL
Sbjct: 1240 -LEPL 1243
>At3g42880.1 68416.m04495 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase PRK1,
Lycopersicon esculentum, PIR:T07865
Length = 633
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +3
Query: 228 LKRLKCILLNNNRIVRIGENLEHY-IPNLESVILTNNNIS-ELGDLDPLSTLPKLRTLSL 401
L L+ I L+NN + G + +P L+S++L+NN+ S E+ D D P+L+ + L
Sbjct: 90 LPNLRTIRLDNNLLS--GPLPPFFKLPGLKSLLLSNNSFSGEIAD-DFFKETPQLKRVFL 146
Query: 402 MHNPVANK 425
+N ++ K
Sbjct: 147 DNNRLSGK 154
>At3g06060.1 68416.m00693 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 326
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 492 KQKERDEANALFKSRKGKEIQREIAKKAKTFVPGGN 599
+QK R E A+ + G E+AKKA + GN
Sbjct: 229 EQKSRPEVTAIIAASSGSMETEEVAKKAMDGIKAGN 264
>At2g46490.1 68415.m05786 expressed protein (APS2) identical to cDNA
Aps2, partial cds GI:4519894
Length = 134
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -2
Query: 253 NRIHFNLFSSGKPSSFLISLSEKSIVSN*SSVAP 152
N + NLFSS SS L SLS S +SN +S P
Sbjct: 75 NIMAMNLFSSSSSSSNLQSLSSSSSLSNLASDLP 108
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -1
Query: 455 FECHICPIMVFV-GNWIVHE**CSQLW*CT 369
F C C + V G+W HE C +LW CT
Sbjct: 265 FSCGKCGKALAVKGDWRTHEKNCGKLWYCT 294
>At1g02290.1 68414.m00171 expressed protein
Length = 443
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 465 LRLLDFRKIKQKERDEANALFKS-RKGKEIQREIAKKAKTFVPGGNMPDPKVTNLTPQEI 641
L+LLD ++ KE D A FK+ K ++R K+ TF G+ + +T + +
Sbjct: 178 LKLLDLNRVPSKEMDSATCRFKTPNVVKPVERN-RSKSLTFPRSGSSKNSLKIKITKEGV 236
Query: 642 HK 647
+
Sbjct: 237 FR 238
>At5g01690.1 68418.m00086 cation/hydrogen exchanger, putative
(CHX27) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 732
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 201 YRCPRSLSYQIDRA*HPDFRFV 136
+ CP S++ IDR PDFRFV
Sbjct: 560 HNCPCSVALFIDRGRLPDFRFV 581
>At4g24760.1 68417.m03545 expressed protein
Length = 365
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 291 EHYIPNLESVILTNNNISELGDLDPLSTLPKLRTLSLMHNPV 416
E+Y E++IL ++ +D + LP+LR S++H+P+
Sbjct: 132 ENYGAKQENIILYGQSVGSGPTVDLAARLPRLRA-SILHSPI 172
>At3g20190.1 68416.m02559 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GB:AAA33715
[Petunia integrifolia]
Length = 679
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 354 DLDPLSTLPKLRTLSLMHN 410
DL+PL+ + LRTLS M+N
Sbjct: 111 DLEPLAAIKNLRTLSFMNN 129
>At1g74180.1 68414.m08591 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 951
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 228 LKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNNNISELGDLDPLSTLPKLRTLSL 401
L +L+ + L++N++ + + +LE + L++NN L+PL+ L KL+ L
Sbjct: 258 LNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRL 315
>At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3)
similar to auxin transport protein [Arabidopsis
thaliana] gi|5817301|gb|AAD52695
Length = 640
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 632 SRNP*DPRSNQECIIPTGGRTSDQN 706
++NP D +NQ+ +PTGG+++ +
Sbjct: 328 NKNPKDVNTNQQTTLPTGGKSNSHD 352
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 408 NPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALFKSRKGKEIQRE 560
N A+K V+ + EL D +K K+KE+DE+ K +K K+ +++
Sbjct: 150 NKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQ 200
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -1
Query: 455 FECHICPIMVFV-GNWIVHE**CSQLW*CT 369
F C +C V G+W HE C +LW C+
Sbjct: 262 FACRMCGKAFAVKGDWRTHEKNCGKLWYCS 291
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 455 FECHICPIMVFV-GNWIVHE**CSQLW*C 372
F C +C ++ V G+W HE C + W C
Sbjct: 229 FSCRLCGKLLAVKGDWRTHEKNCGKRWVC 257
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,943,963
Number of Sequences: 28952
Number of extensions: 355373
Number of successful extensions: 1119
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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