Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D01
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    29   3.2  
06_01_0277 - 2039129-2040280                                           28   9.9  
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019...    28   9.9  

>01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,
            9739708-9739831,9739927-9740635,9741826-9742132,
            9742213-9743704
          Length = 1108

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 332  IIIVNFNYGAIYVLKPFWFVIYSPF*REIFTQIWCTSVALYNI 460
            +I+ NF   A +VL  FW+V+Y+ F   + T I   S  LY +
Sbjct: 934  MILYNFYKNATFVLVLFWYVLYTAF--TLTTAITEWSSLLYTV 974


>06_01_0277 - 2039129-2040280
          Length = 383

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = +1

Query: 688 MHLIFFNVFQTIKVGGIMFTEFFLSIIXDKRQLII 792
           +    F+V + ++VGG+++ + +L    ++RQL++
Sbjct: 309 LEFFMFDVDRVLRVGGLLWIDSYLCQSEERRQLVV 343


>02_02_0574 -
           11701359-11701460,11701469-11701570,11701725-11701922,
           11702090-11704052,11705312-11706126
          Length = 1059

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 497 QLRIIMRKENTALWKVTYSN-LISTYLICSKM*FIYVHNRITDIIKITITVCPPR 658
           +LRI+   E+T  W  +Y N LI +     K+  +Y+H        I+   C PR
Sbjct: 688 ELRILQISESTGAWHDSYENTLIDSLCNLHKICDLYIHGCKLSTEFISNIRCSPR 742


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,915,242
Number of Sequences: 37544
Number of extensions: 404254
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)