Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D01
(799 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45352| Best HMM Match : PAN (HMM E-Value=0.00031) 32 0.62
SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8) 31 1.4
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 31 1.4
SB_45350| Best HMM Match : PAN (HMM E-Value=0.00039) 31 1.4
SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0) 29 3.3
SB_46871| Best HMM Match : PAN (HMM E-Value=1) 29 3.3
SB_23472| Best HMM Match : HIT (HMM E-Value=0.43) 28 7.6
SB_18966| Best HMM Match : RVT_1 (HMM E-Value=0.028) 28 7.6
SB_2085| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32) 28 7.6
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 28 7.6
SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.6
>SB_45352| Best HMM Match : PAN (HMM E-Value=0.00031)
Length = 332
Score = 31.9 bits (69), Expect = 0.62
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 430 MVYQCCTLQHKYRTTENKLFYLAITDHYEEREYCPLES 543
M+++ C+ KY TEN L+YL T H YC S
Sbjct: 119 MLFKQCSDHFKYGVTENGLYYLQDTHHNWYPVYCDFTS 156
>SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)
Length = 214
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 430 MVYQCCTLQHKYRTTENKLFYLAITDHYEEREYCPLES 543
M+++ C+ KY T+N L+YL T H YC S
Sbjct: 1 MLFKQCSDHFKYGVTQNGLYYLQDTHHNWYPVYCDFTS 38
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 30.7 bits (66), Expect = 1.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 84 QRVVFHNLVNHFDIHCLLGSWNSGWHLH 167
+ ++FH+++NH D H +L + G+ H
Sbjct: 572 EHIIFHDIMNHLDTHNILVKFQHGFRRH 599
>SB_45350| Best HMM Match : PAN (HMM E-Value=0.00039)
Length = 334
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 430 MVYQCCTLQHKYRTTENKLFYLAITDHYEEREYCPLES 543
M+++ C+ KY T+N L+YL T H YC S
Sbjct: 121 MLFKQCSDHFKYGVTQNGLYYLQDTHHNWYPVYCDFTS 158
>SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)
Length = 1161
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 409 AGNFHS-DMVYQCCTLQHKYRTT-ENKLFYLAITDHYEEREYCPLESHLF 552
+GN +S D +Y L H R + L Y + +HY + PL SH++
Sbjct: 526 SGNTYSLDTLYFMMALMHFIRLNYKEALEYFLLAEHYSPKTSTPLLSHIY 575
>SB_46871| Best HMM Match : PAN (HMM E-Value=1)
Length = 525
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 272 KEEDLINLDI---IFVVNVSYIDIIIVNFNYGAIYVLKPFW 385
K E+LIN + ++N SY DI+ V YV+ FW
Sbjct: 295 KRENLINCHVSPHFLIINGSYFDIVCVLLRMRGGYVVSYFW 335
>SB_23472| Best HMM Match : HIT (HMM E-Value=0.43)
Length = 168
Score = 28.3 bits (60), Expect = 7.6
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +3
Query: 84 QRVVFHNLVNHFDIHCLLGSWNSGW 158
+ ++FH+++NH D H +L + G+
Sbjct: 43 EHIIFHDIMNHLDTHNILVKFQHGF 67
>SB_18966| Best HMM Match : RVT_1 (HMM E-Value=0.028)
Length = 252
Score = 28.3 bits (60), Expect = 7.6
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +3
Query: 84 QRVVFHNLVNHFDIHCLLGSWNSGW 158
+ ++FH+++NH D H +L + G+
Sbjct: 88 EHIIFHDIMNHLDTHNILVKFQHGF 112
>SB_2085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = -3
Query: 278 LPSIMACAQYFGN*TTDNRKSAKPDNASMHTVNGSTIM*MPA 153
LPS M A GN T R S KP AS+ NG PA
Sbjct: 11 LPSTMCLATSRGNITPFIRSSVKPLRASIQASNGDKHTYQPA 52
>SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 28.3 bits (60), Expect = 7.6
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +3
Query: 84 QRVVFHNLVNHFDIHCLLGSWNSGW 158
+ ++FH+++NH D H +L + G+
Sbjct: 177 EHIIFHDIMNHLDTHNILVKFQHGF 201
>SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 28.3 bits (60), Expect = 7.6
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +3
Query: 84 QRVVFHNLVNHFDIHCLLGSWNSGW 158
+ ++FH+++NH D H +L + G+
Sbjct: 672 EHIIFHDIMNHIDTHNILVKFQHGF 696
>SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)
Length = 698
Score = 28.3 bits (60), Expect = 7.6
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +3
Query: 84 QRVVFHNLVNHFDIHCLLGSWNSGW 158
+ ++FH+++NH D H +L + G+
Sbjct: 291 EHIIFHDIMNHLDTHNILVKFQHGF 315
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 28.3 bits (60), Expect = 7.6
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +3
Query: 84 QRVVFHNLVNHFDIHCLLGSWNSGW 158
+ ++FH+++NH D H +L + G+
Sbjct: 502 EHIIFHDIMNHLDTHNILVKFQHGF 526
>SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 979
Score = 28.3 bits (60), Expect = 7.6
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +3
Query: 84 QRVVFHNLVNHFDIHCLLGSWNSGW 158
+ ++FH+++NH D H +L + G+
Sbjct: 128 EHIIFHDIMNHLDTHNILVKFQHGF 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,820,485
Number of Sequences: 59808
Number of extensions: 507658
Number of successful extensions: 980
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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