Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D01
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.6  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 97  KTTRCPFSVFHVSVARKF*LKPACPARFYYC 5
           KT R  +SV  +SVA +       PA+ Y C
Sbjct: 379 KTDRLLYSVLPISVANELRHSRPVPAKKYDC 409


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 97  KTTRCPFSVFHVSVARKF*LKPACPARFYYC 5
           KT R  +SV  +SVA +       PA+ Y C
Sbjct: 379 KTDRLLYSVLPISVANELRHSRPVPAKKYDC 409


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 542 VTYSNLISTYLICSKM*FIY 601
           + YS+L S Y+ C  M F+Y
Sbjct: 344 IIYSSLSSFYIPCIIMVFLY 363


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 325 YRYHYSKL*LWCHLCTQTFLVCYLLSVLAGNFHSDMVYQC 444
           YR H  +    C  C+++F V   LSV       +  Y+C
Sbjct: 111 YRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKC 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,239
Number of Sequences: 438
Number of extensions: 5377
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)