Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C20
         (725 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    27   0.12 
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    24   1.1  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    24   1.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.7  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 103 ISQCFMEPVSAVFIGGFLLVLGTTQIVIYKSHATE-VMDVRSSKLFGVQMF 252
           + Q  +E +    +GGFLL+L     +++ SH  E ++    + L G  +F
Sbjct: 99  VDQYLLEQLVCEQLGGFLLILTPNGKIVFVSHTVEHLLGHLQTDLMGQSIF 149


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +1

Query: 226 SKLFGVQMFFTLLVPVLAVIRFLLQALLFKSGCVYGYMVVALTVTLVVFPLSAYLAILER 405
           ++ FG+Q+   L V V+     +   L+F SG       V++   L+++ L + L ++ +
Sbjct: 227 NECFGLQILGILFVGVIYTTYTIFLLLIFGSGSATPENNVSVVYVLILYILESLLYMVTK 286


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 328 YGYMVVALTVTLVVFPLSAYLAILE 402
           YG+++VA  + LV+F L+ +  I+E
Sbjct: 115 YGFVIVAHLLFLVIFVLNIWCWIVE 139


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 74  HLERXGWITAYHNVSWSPYLL 136
           HLER  W+ ++     +P  L
Sbjct: 238 HLERKAWVASFGRPKMTPQSL 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,695
Number of Sequences: 336
Number of extensions: 4306
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)