Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_C20
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 28 1.2
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 27 2.1
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 27 2.1
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 4.8
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 4.8
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 26 6.3
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 26 6.3
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 26 6.3
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 26 6.3
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 6.3
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 8.3
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 25 8.3
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 115 FMEPVSAVFIGGFLLVLGTTQIVIYKSHATEVMDVRSSKLFGVQMFFTLLVP-VLAVIRF 291
F EP + V +G L V+G + S +E+ R +FG +F + +P L+V
Sbjct: 70 FGEPETLVVLGATLYVIGVMLGPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSVNLA 129
Query: 292 LLQALLFKSG 321
+ F SG
Sbjct: 130 MFVVFRFFSG 139
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 2.1
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +1
Query: 331 GYMVVALTVTLV-----VFPLSAYLAILERRFLLPSVPPRGHGFVLLVFWAMIFVSE 486
G MV A VT VFP S YLAI+++R P+V + V ++ +IF E
Sbjct: 348 GCMVAASRVTYSYARDGVFPFSKYLAIVDKRTKTPNVCVWMNVVVGILCCLLIFAGE 404
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 340 VVALTVTLVVFPLSAYLAILERRFLLPSVPP 432
V + T T+ +F L + LER+ LLPS PP
Sbjct: 250 VTSSTQTVHIFRLKEVYSNLERQGLLPSSPP 280
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 319 GCVYGYMVVALTVTLVVFPLSAYLAILERRFLLPSVPPRGHGFVL 453
G ++GY+ ALT+T ++ S +L E R + S +G G VL
Sbjct: 1041 GSIFGYLEPALTITAILSTKSPFLGDDEAR-EIRSKQSQGWGDVL 1084
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 296 NRNLITANTGTKRVKNI*TPKSFDDRTS 213
NRN++ + + TK ++ + TP+ F +R S
Sbjct: 704 NRNVVVSESLTKSMEEVLTPEKFYERLS 731
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 22 RSVKPSVIMLQSCPPNVXLGALW-VDH 99
RS+ P I S PP+V +GAL V+H
Sbjct: 397 RSLAPGFIFTTSLPPHVMVGALTAVEH 423
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 6.3
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = +1
Query: 136 VFIGGFLLVLGTTQIVIYKSHATEVMDVRSSKLFGVQMFFTLLVPVLAVIRFLLQALLFK 315
+ IG FL G + + + T V + + L G+ +L+ L + +LL A LF+
Sbjct: 453 MMIGSFLFPAGIFWLA-WSGYYTYVHWIVPT-LSGLLTGAGILLIFLQCLNYLLDAYLFR 510
Query: 316 SGCVYGYMVVALTVTLVVFPLSA 384
+ V+ V+ + FPL A
Sbjct: 511 AASVFAANVIMRSAVAGGFPLFA 533
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +3
Query: 159 GLGNHTNCYLQKPCH*GDGCPIIEAF-WSSDVFYS 260
G+ N K CH DGC ++E F W + S
Sbjct: 301 GIKNDAELKGMKECHIRDGCALVEYFAWLDEYLNS 335
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +1
Query: 115 FMEPVSAVFIGGFLLVLGTTQIVIYKSHATE 207
F+E +++GGF L + ++ HA E
Sbjct: 150 FVEEAKVIYVGGFHLTVSPESMLCLAQHANE 180
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 49 LQSCPPNVXLGALWVDHGISQCFMEPVSAVF 141
+Q CPPN L AL++ IS+ P + F
Sbjct: 48 IQKCPPNCKLPALYLLDSISKNLGAPYTYFF 78
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -3
Query: 345 NYHITIHTTTFEQ 307
NYHITIH +++E+
Sbjct: 382 NYHITIHVSSYER 394
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 615 HTEHEHYHTRHVTTDEQ*HFEAILKIFQVPPPS 517
H H H+H H + D+ A K VP PS
Sbjct: 299 HHHHHHHHHHHHSHDDDPSSPAEKKQNHVPSPS 331
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,789
Number of Sequences: 5004
Number of extensions: 68063
Number of successful extensions: 156
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -