Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_C20
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0639 + 23873735-23873814,23873932-23874148,23874259-238744... 31 0.70
06_03_0701 - 23655762-23655857,23656067-23656141,23656245-236563... 31 0.93
01_05_0637 + 23860857-23860936,23861057-23861273,23861388-238615... 31 1.2
12_02_0246 - 16393943-16394410 30 2.2
02_05_0020 + 25070664-25070692,25070934-25071513,25071605-250718... 30 2.2
07_03_0406 + 17785046-17785408,17786411-17786479,17786764-177868... 28 8.7
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 8.7
03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,654... 28 8.7
>01_05_0639 +
23873735-23873814,23873932-23874148,23874259-23874420,
23876037-23876357
Length = 259
Score = 31.5 bits (68), Expect = 0.70
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +1
Query: 85 LWVDHGISQCFMEPVSAVFIGGFLLVLGTTQIVIYKSHATEVMDVRSSKLFGVQMFFTLL 264
LWV +GI + V I G L++ T ++I+ ++ +R + GV++ F L
Sbjct: 56 LWVFYGIPVVHPNSILVVTINGIGLLVEGTYLLIFFLYSPNKKRLRMCAVLGVELVFMLA 115
Query: 265 VPVLAVI 285
V +L V+
Sbjct: 116 V-ILGVL 121
>06_03_0701 -
23655762-23655857,23656067-23656141,23656245-23656301,
23656385-23656501,23657286-23657405,23657491-23657613,
23657967-23658056,23658184-23658309,23658809-23658901,
23658947-23659021,23659115-23659222,23659481-23659552,
23659673-23659735,23660850-23661017
Length = 460
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -3
Query: 621 RLHTEHEHYHTRHVTTDEQ*HFEAILKIFQVPPPSFFVDIQK**ILRYEYH 469
++H+++ V+++ F +L++F+V P F VD++K EYH
Sbjct: 378 KVHSQNYKLRLEGVSSNRMSPFAVVLQVFEVAPSLFMVDVRKVAGDTLEYH 428
>01_05_0637 +
23860857-23860936,23861057-23861273,23861388-23861549,
23862850-23863155
Length = 254
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 85 LWVDHGISQCFMEPVSAVFIGGFLLVLGTTQIVIYKSHATEVMDVRSSKLFGVQMFFTLL 264
LWV +GI + V I G L++ T + I+ ++ +R + GV++ F L
Sbjct: 56 LWVFYGIPIVHPNSILVVTINGIGLIVEGTYLFIFFLYSPNKKRLRMLAVLGVELVFMLA 115
Query: 265 VPVLAVI 285
V +L V+
Sbjct: 116 V-ILGVL 121
>12_02_0246 - 16393943-16394410
Length = 155
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 78 WSAXGGSRHITMFHGARICCVH-RWI-PIGLGNHTNCYLQK 194
WSA R + GA +CC H RW+ P+G + ++++
Sbjct: 88 WSARSARRSASFALGAAMCCRHMRWVCPVGFPRFLHDFIRR 128
>02_05_0020 +
25070664-25070692,25070934-25071513,25071605-25071817,
25071918-25072207,25072301-25072412,25072539-25072763,
25072853-25073464
Length = 686
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +1
Query: 520 WWWHLKNLQ---DRLEMSLFVGRYVSCMIMFVLGM 615
+WW LKNL L SLF+G ++ VLG+
Sbjct: 363 FWWGLKNLSCLGQNLSTSLFIGEITFATVIGVLGL 397
>07_03_0406 +
17785046-17785408,17786411-17786479,17786764-17786868,
17787297-17787346,17787363-17787489,17788084-17788221,
17788863-17788940,17789141-17789218,17789318-17789386,
17789720-17789803,17789895-17789981,17790364-17790459,
17790541-17790615,17790762-17790888,17791027-17791142
Length = 553
Score = 27.9 bits (59), Expect = 8.7
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 475 FVSENLSFLNINKEGWWWHL 534
++ L LN+NK+ +WW+L
Sbjct: 489 YLEARLDELNLNKDSYWWYL 508
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +3
Query: 249 VFYSFSTSVGCNKVSVTSIIVQKWLCVWL 335
V Y + + + + TS++ KW C+WL
Sbjct: 212 VVYKILSKLPLKEAAKTSVLSTKWRCIWL 240
>03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,
6541815-6543215,6543268-6543357,6543800-6544515,
6545549-6545707,6545877-6546186,6546794-6546861,
6547354-6547896
Length = 1247
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 327 VWLYGSCINSYSGSISTVGLLSDPREEVLIT 419
+WL+ C+N +S + T+ L P E+ +T
Sbjct: 990 LWLHEICLNRFSSASKTLHTLVSPEEDANLT 1020
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,665,475
Number of Sequences: 37544
Number of extensions: 456303
Number of successful extensions: 966
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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