Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C20
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16646| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.058
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)                      31   0.72 
SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)                      31   0.72 
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 29   2.9  
SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_15867| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_16646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -1

Query: 236 KSFDDRTSITSVAWLL*ITICVVPKTNRNPPMNTADTG-SMKHCDMP*STXSAPSXTFG 63
           KSF   ++ +  +W L IT  + PK    PP+    TG S   C  P S  S P    G
Sbjct: 23  KSFKKNSNASRSSWSLRITFYIRPKWEAQPPIKIGPTGYSSDFCAKPLSRRSPPPSKLG 81


>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
          Length = 708

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 18/86 (20%), Positives = 41/86 (47%)
 Frame = +1

Query: 187 YKSHATEVMDVRSSKLFGVQMFFTLLVPVLAVIRFLLQALLFKSGCVYGYMVVALTVTLV 366
           Y++ A    DV +S  F      +L + VL +I  ++  ++     +   +++ LT+ ++
Sbjct: 507 YRTRARGAKDVCASVFFAYHPV-SLCMIVLNIIIIIIMLIIIIIIIMLTIIIIMLTIIII 565

Query: 367 VFPLSAYLAILERRFLLPSVPPRGHG 444
           +  L   + I+    ++   PP+G G
Sbjct: 566 IIMLIIIIIIIMLTIIIIIAPPKGDG 591


>SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)
          Length = 582

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 36  KRHHAAVLSSKCXTWSAXGGSRHITMFHGARICCVHRWIPIGL 164
           KR H  +  S+         S  +T FH   I C+HRW+P  L
Sbjct: 327 KRQHPQITYSQSELMDLRNNSSSLTDFH---IFCLHRWLPANL 366


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +1

Query: 22  RSVKPSVIMLQSCP----PNVXLGAL-WVDHGISQCFMEPVSAVFIGGFLLVLGTTQIV 183
           R V   +  LQSC     PN  + +L W+D  + +   +P    +I  FL +LG  +++
Sbjct: 241 RIVDKMLYSLQSCSNEYFPNSSIESLMWIDISLQRSCSKPTRLHYINNFLSILGADRVL 299


>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 633 HDARRLHTEHEHYH-TRHVTT 574
           H  R+LHT  +H H TRH TT
Sbjct: 119 HSTRKLHTYTQHAHLTRHSTT 139


>SB_15867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 351 NSYSGSISTVGLLSDPREEVLITVRAS*RSRFC 449
           N+Y G + T G+    RE++++  R + +S FC
Sbjct: 184 NAYRGFLLTHGIKIIEREDIIVRTRIAHKSTFC 216


>SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/86 (23%), Positives = 32/86 (37%)
 Frame = -1

Query: 527 HHHPSLLIFKNDKFSDTNIIAQKTKSTKP*PLGGTDGNKNLLSRIAK*ADSGNTTRVTVN 348
           H + +  I   D  S+ N       +++      +  N N  +   K  +    T+ T +
Sbjct: 73  HSNNNYTIDNKDNSSNNNYTINNKNNSRNNNYTISTSNNNYTTNYNKSKNFTTRTKTTTS 132

Query: 347 ATTI*PYTQPLLNNNACNRNLITANT 270
            TT  P T     NN    N  T+NT
Sbjct: 133 ETTTTPSTTKNNRNNTATSNNCTSNT 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,676,207
Number of Sequences: 59808
Number of extensions: 532431
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)