Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C20
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U40800-5|AAO91743.1|  936|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical
           protein C27D8.3b protein.
          Length = 916

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 596 IIHDT*RPTNNDISRRS*RFFKCHHHPSLL 507
           I++   RP NN+++++     + HHHPSL+
Sbjct: 838 IVYSAARP-NNNLNQQQQHHHQSHHHPSLI 866


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical
           protein C27D8.3a protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 596 IIHDT*RPTNNDISRRS*RFFKCHHHPSLL 507
           I++   RP NN+++++     + HHHPSL+
Sbjct: 904 IVYSAARP-NNNLNQQQQHHHQSHHHPSLI 932


>U40800-5|AAO91743.1|  936|Caenorhabditis elegans Hypothetical
           protein D2096.3 protein.
          Length = 936

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
 Frame = -1

Query: 704 DLLSSRGCIFLRPXCSSXK*SKWCMMP---GAFIPSTN----IIIHDT*RPTNNDISRRS 546
           D   SRGCI+     SS   + WC  P   G  + ST     ++   T  P  N+IS  +
Sbjct: 42  DACQSRGCIWTEAPSSSPVGTPWCYYPTESGFTVQSTGTNSFVLAAKTKNPYGNNISPLN 101

Query: 545 *RFFKCHHHPSLLIFKNDKF-SDTNIIAQKTKSTKP*PL-GGTDGNKNLLS 399
            ++        L I  +D++    N   + + ST+      GT G+ ++ S
Sbjct: 102 VKYSSNGATLLLTIGNDDRYVPPVNFPKKPSTSTESLKFTSGTIGSSDVFS 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,373,221
Number of Sequences: 27780
Number of extensions: 389460
Number of successful extensions: 814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)