Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C19
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.6  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   2.6  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   6.1  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    26   6.1  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    26   6.1  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   6.1  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    26   8.0  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 712 GSENYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDM 858
           G+E  +L    V   D++    +  +  +F N+  L YL+++ N L D+
Sbjct: 635 GNEIAYLTGCPVTIRDLNAVENRLSSLTSFSNLLNLQYLDISYNQLEDL 683


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 739 SSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDM 858
           S +  L  S C ++ I  N F ++  L+ L+++GN L+++
Sbjct: 332 SQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEI 371


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 754 LDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDM 858
           L++SY  +  I +  F+N   L +L V+GN L+++
Sbjct: 835 LNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELANL 869


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 787 TANTFKNMPGLMYLNVAGNNLSDMD 861
           TA TF+N P L    + GN L ++D
Sbjct: 142 TACTFQNYPDLNTCEICGNQLKNVD 166


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 220 FGESINKTVKKDKDADNLLDQYEDYEP 300
           FG S N T    KDA   LD Y++Y P
Sbjct: 379 FGNSYNVTRILTKDATFDLDAYQNYSP 405


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 417 LCTDFEEAALGLSVSLRYRAYAVSGTGPVLVVQNLLV 307
           LC ++E   L   +SL +RAY    T P L   + L+
Sbjct: 414 LCLNYETQPLAPVISLSHRAYVSLPTQPELAKYHCLI 450


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 137 SHSITVTLDFWNLALRSSDVLTRSMKEKQMKSWHTVT 27
           SH+  VT     LAL S DVL     +K ++ W  VT
Sbjct: 433 SHTAPVTA----LALSSDDVLITGADDKTVRQWDIVT 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,494,844
Number of Sequences: 5004
Number of extensions: 70478
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)