Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C19
         (869 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)                 33   0.40 
SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1)             29   4.9  
SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)                   29   4.9  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)                   29   6.5  
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)                     29   6.5  
SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)            29   6.5  
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)                   29   6.5  
SB_16977| Best HMM Match : Involucrin (HMM E-Value=0.012)              28   8.6  
SB_33751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_25378| Best HMM Match : CNH (HMM E-Value=0.037)                     28   8.6  

>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
          Length = 575

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +1

Query: 541 NSTIGYIAPNAFHGVHDLYAVNLSNNNL 624
           N++I  IAP+AF G+ +L ++NL +NN+
Sbjct: 137 NNSISAIAPHAFKGLDNLQSLNLRHNNI 164


>SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1)
          Length = 370

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 319 LYNEDRPCPRDCICSVSQGYRQAK 390
           L N  + CP  C C +S+GYR +K
Sbjct: 119 LDNVGKLCPSHCFCLLSRGYRASK 142


>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
          Length = 1206

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 535  IVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 648
            I N+ I  I    F  V DL  +NL NN + ++  +TF
Sbjct: 1120 IGNNLIKDIPSGVFANVRDLQVLNLHNNEITTIDEDTF 1157


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 23/117 (19%), Positives = 48/117 (41%)
 Frame = +1

Query: 511 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAXXXXXXXXXXXXX 690
           L  + ++ +  + +  +  + F G+  L  + L  N L+++   TF              
Sbjct: 115 LASLRSLDLSANRLSSLPEDTFEGLSSLQDLFLDFNRLRAIPETTFHGLAALQRLRLHNN 174

Query: 691 XXXFPAAGSENYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDMD 861
                   SE       S++ L ++   +  I   TF+N+ GL  L +  NN++++D
Sbjct: 175 NLK---TFSERTLQGTLSLKSLQLNNNLLTRIEPGTFRNLRGLEILYLNNNNITELD 228


>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1565

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
 Frame = +3

Query: 519  GCYCKNREQH-----DWLYRPQCFPWCP*PLRSQP----IQQQPKEPS 635
            G YC+N+EQ      D+ +R  C    P P+ SQP    IQ  P EPS
Sbjct: 1314 GVYCRNKEQRSGKCKDFRFRFACSD-IPRPVPSQPSVPSIQDVPDEPS 1360


>SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)
          Length = 1044

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 538 VNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFA 651
           V + I YI   AF    DL  +NL+NN ++ +    FA
Sbjct: 4   VRANIQYIDDFAFEKARDLVYINLANNPIEVIEEGAFA 41


>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
          Length = 622

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 277 DQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV 447
           +Q ED      +E + NE R C R  IC   + Y + K        +KF  ++ D+V
Sbjct: 490 EQLEDNPTVPLEEHIDNEGRKCKRQKICESQKTYNE-KMKKQTQKAKKFKFNVYDIV 545


>SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)
          Length = 1953

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 677 RFQTIPSNFLQLGPKIT-S*TLPLYKSLMFHTVTCSTSRQILSKICLV 817
           R +   S  L L PKIT S T  L K    H V  + ++Q++S++C +
Sbjct: 654 RMKIHASEALTLEPKITQSSTHRLSKPFTVHAVQSTMAKQLVSQVCSI 701


>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
          Length = 435

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 239 KPSRKTKTPTTYWINMRITNPRNTKRFCTTRTGP 340
           K SRKTKT +    +++    RNTK    T+T P
Sbjct: 89  KTSRKTKTSSNTKTSLKTKTSRNTKTSRNTKTKP 122


>SB_16977| Best HMM Match : Involucrin (HMM E-Value=0.012)
          Length = 247

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 277 DQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV 447
           +Q ED      +E + NE R C R  IC   + Y + K        +KF  ++ D+V
Sbjct: 115 EQLEDNPTVPLEEHIDNEGRKCKRKKICESQKTYNE-KMKKQTQKAKKFKFNVYDIV 170


>SB_33751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -3

Query: 834 NIQVHQTRHIFESICRDVLHVTV 766
           ++QVH +RH+  ++C D+ ++ V
Sbjct: 2   DVQVHLSRHLLRTVCTDITNLMV 24


>SB_25378| Best HMM Match : CNH (HMM E-Value=0.037)
          Length = 346

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 220 FGESINKTVKKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGY 378
           F ES+    + + D  +++  +ED  P+++++ L   D P P+  +    +GY
Sbjct: 286 FDESLQLFARLETDPTHVIGLFEDLLPSDFRKQLEYPDEP-PKLLMSETEKGY 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,427,924
Number of Sequences: 59808
Number of extensions: 547358
Number of successful extensions: 1534
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)