Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C18
         (804 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...   111   8e-27
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   8.7  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   8.7  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
            transcriptase andRNase H protein.
          Length = 712

 Score =  111 bits (266), Expect = 8e-27
 Identities = 59/254 (23%), Positives = 125/254 (49%)
 Frame = +1

Query: 40   LXFKNGFFHLRVSKDSXKSPSFVTMXGQYXFLKAPFGLSICPKVFTXFISIIFRDLITRG 219
            +  ++ ++ + +S +S +  +F+     Y +   PFGL      F+  + ++    + R 
Sbjct: 394  IDLRSSYWQIPLSPESRQYTAFLYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTEV-RE 452

Query: 220  IVIVFIDDLLIPAINEAQAVARLREVLQLAMEYGLQINWKKSQLLVRKVEYLGHVIEGGT 399
             V+ +IDDLL+ +    + +  LR+V +   +  + IN +KS  + ++V++LGH++    
Sbjct: 453  FVVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMTINLEKSNFIQKEVKFLGHILTING 512

Query: 400  VMPSSGKTDAVIKFPEPRNEKQLQSFLGLCSYFRKYIQNYAVIARPLTDMLRKDKKFEFN 579
            +     K  A+  FP P+  K +++FLGLC+++RK+   Y+   + L  +LRK +K+ + 
Sbjct: 513  IKADPEKISAIRNFPVPQKTKHVRAFLGLCNFYRKFCARYSAATQDLNKLLRKGEKWRWG 572

Query: 580  NEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAYAAILLQKDDNSELHPVHYMS 759
               +  F+ +K+      +L+  +      + TD+S     A L Q  ++     + + S
Sbjct: 573  RNEQEAFDRVKDLFLEAVLLRYPDLNKIFYVQTDSSGYGLGAELYQIQEDGSRGVIAFAS 632

Query: 760  KRTTDAXSKYTSYE 801
            +        YT+ E
Sbjct: 633  RSLRGPELNYTTTE 646


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 745 LDVVHCCHLSVII*PHMLYLRHLYEVLFLLLVH 647
           L  V  C + V+      Y  HL+ VL+++L+H
Sbjct: 153 LAYVWICEMGVVT--LQAYTLHLFCVLYVVLLH 183


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 745 LDVVHCCHLSVII*PHMLYLRHLYEVLFLLLVH 647
           L  V  C + V+      Y  HL+ VL+++L+H
Sbjct: 153 LAYVWICEMGVVT--LQAYTLHLFCVLYVVLLH 183


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,487
Number of Sequences: 336
Number of extensions: 3660
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)