Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C18
         (804 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    28   0.39 
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    27   0.90 
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   4.8  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   4.8  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 27.9 bits (59), Expect = 0.39
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 499  RKYIQNYAVIARPLTDMLRKDKKFEFNNEHRLVFNM---LKEKLTSKPVLKIY 648
            R  +  Y+   R LT M+R  +K  F++ H+L  +M   +K K T+   ++ Y
Sbjct: 947  RDELIRYSTALRDLTQMMRDIRKSRFSHLHKLTTHMALRVKHKFTNIMQIRNY 999


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 26.6 bits (56), Expect = 0.90
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 413  RERQMLSLNFLSREMRSNYKVS*DFVPILENTY 511
            R++ + ++NF+ RE +   ++  +  PIL  TY
Sbjct: 1402 RDQALKAINFIEREQQQEMEIFEETKPILTTTY 1434


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 595  VFNMLKEKLTSKPVLKIYEPKAET 666
            +FN  + KLTS PV ++++  + T
Sbjct: 1161 LFNFQRNKLTSLPVGEVFDTNSNT 1184


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 595  VFNMLKEKLTSKPVLKIYEPKAET 666
            +FN  + KLTS PV ++++  + T
Sbjct: 1162 LFNFQRNKLTSLPVGEVFDTNSNT 1185


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,168
Number of Sequences: 2352
Number of extensions: 13786
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84823812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)