Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C18
         (804 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.          92   2e-18
AK127270-1|BAC86909.1|  248|Homo sapiens protein ( Homo sapiens ...    51   4e-06
AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.     50   7e-06
AF480924-3|AAM81188.1|  863|Homo sapiens pol protein protein.          30   8.5  

>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
          Length = 1183

 Score = 92.3 bits (219), Expect = 2e-18
 Identities = 71/260 (27%), Positives = 123/260 (47%), Gaps = 11/260 (4%)
 Frame = +1

Query: 40   LXFKNGFFHLRVSKDSXKSPSFVT------MXGQYXFLKAPFGLSICPKVFTXFISIIFR 201
            L  K+ FF +R + +S K  +F        +  QY +   P G    P +F   ++   +
Sbjct: 258  LDLKDAFFSIRFAPESQKLFAFQWEDPESGVTTQYTWTWLPQGFKNSPTIFGEELARDLQ 317

Query: 202  DLITRG---IVIVFIDDLLIPAINEAQAVARLREVLQLAMEYGLQINWKKSQLLVRKVEY 372
               TR    +++ ++DDLL+              +L+   + G +++ KK+Q+   +V Y
Sbjct: 318  KCPTRDLGCVLLQYVDDLLLGHPTAVGCAKGTDALLRHLEDCGYKVSKKKAQICRPQVRY 377

Query: 373  LGHVIEGGTVMPSSGKTDAVIKFPEPRNEKQLQSFLGLCSYFRKYIQNYAVIARPLTDML 552
            LG  I  G     S +   +   PEP++ KQ++ FLG   + R +I N+AV+A+PL ++ 
Sbjct: 378  LGFTIRQGERSLGSERKQVICTLPEPKSRKQVRKFLGAAGFCRLWIPNFAVLAKPLYEVT 437

Query: 553  R-KDKK-FEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAYAAILLQKDD 726
            +  D++ FE+ ++ +  F  LKEKL S P L +        L+        A  +L +  
Sbjct: 438  KWGDREPFEWGSQQQQAFRELKEKLMSAPALGLPNLTKPFTLYVSERE-KMAVRVLTQTV 496

Query: 727  NSELHPVHYMSKRTTDAXSK 786
                 PV Y+SK+  D  SK
Sbjct: 497  GPWPRPVAYLSKQ-LDGVSK 515


>AK127270-1|BAC86909.1|  248|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45337 fis, clone BRHIP3007960. ).
          Length = 248

 Score = 51.2 bits (117), Expect = 4e-06
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 5/206 (2%)
 Frame = +1

Query: 52  NGFFHLRVSKDSXKSPSFVTMXGQYXFLKAPFGLSICPKVFTXFISIIFRDL----ITRG 219
           N FF + V K   K  +F     QY F   P   S  P +     ++I RDL    + + 
Sbjct: 12  NAFFSIPVHKAHQKQFAFSWQGQQYTFTVLPQRYSNSPALCH---NLIRRDLDCFLLLQS 68

Query: 220 IVIV-FIDDLLIPAINEAQAVARLREVLQLAMEYGLQINWKKSQLLVRKVEYLGHVIEGG 396
           I +V +IDD+++   +E +  + L  +++     G +IN  K +     V++LG    G 
Sbjct: 69  ITLVHYIDDIMLIGSSEQEVASTLDLLVRHLYARGWEINPTKIKETSTSVKFLGVQWCGA 128

Query: 397 TVMPSSGKTDAVIKFPEPRNEKQLQSFLGLCSYFRKYIQNYAVIARPLTDMLRKDKKFEF 576
                S   D ++    P  +K+ Q  LG   ++R++      +  P+  +  K   FE+
Sbjct: 129 CQDIPSKVKDKLLHLATPTTKKEAQCLLGRFGFWRQHGPYLGALLWPIYQVTSKAASFEW 188

Query: 577 NNEHRLVFNMLKEKLTSKPVLKIYEP 654
             E       ++  + +  +L  ++P
Sbjct: 189 GPEQEKALQQVQAAVQAALLLGPHDP 214


>AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.
          Length = 1819

 Score = 50.4 bits (115), Expect = 7e-06
 Identities = 31/105 (29%), Positives = 46/105 (43%)
 Frame = +1

Query: 448  PRNEKQLQSFLGLCSYFRKYIQNYAVIARPLTDMLRKDKKFEFNNEHRLVFNMLKEKLTS 627
            P N   L  F+G     R  I +Y  +  PL  +L++   ++++ EH   F  LK  L S
Sbjct: 1009 PSNFTALSFFMGFMDSHRDAIPDYEALVGPLHSLLKQKPDWQWDQEHEEAFLALKRALVS 1068

Query: 628  KPVLKIYEPKAETELHTDASSIAYAAILLQKDDNSELHPVHYMSK 762
               L     +    L    S +A  AIL Q + +   HP+ Y SK
Sbjct: 1069 ALCLMAPNSQLPFRLEVTVSHVALTAILHQ-EHSGRKHPIAYTSK 1112


>AF480924-3|AAM81188.1|  863|Homo sapiens pol protein protein.
          Length = 863

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
 Frame = +1

Query: 223 VIVFIDDLLIPAINEAQAVARLREVLQLAMEYGLQINWKKSQLLVRKVEYLGHVIEGGTV 402
           ++ ++DDLLI A +E+  +   + +L    + GLQ+  ++ Q     V+YLG  +    V
Sbjct: 184 ILHYMDDLLITAESESHLMEAYKLLLLYLEKVGLQVAPERIQ-KGEVVQYLGLKVTSEKV 242

Query: 403 MPSSGKTDAVIKFPEPRNEKQLQSFLGLCSYFRKYIQNYAVIARPLTDMLRKDKKFE--- 573
            P   + +  I   +  N+   Q   G  ++ R Y +       PL ++L  D + +   
Sbjct: 243 TPL--EFEIAIDGLQTLND--FQKLCGNLNWLRPYCKLTTEDMMPLFNILEGDAQLDSPR 298

Query: 574 -FNNEHRLVFNMLKEKL 621
               E RL    +++++
Sbjct: 299 RLTKEARLALQKIEKQI 315


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,464,578
Number of Sequences: 237096
Number of extensions: 1860973
Number of successful extensions: 3316
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3314
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)