Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_C18
(804 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 129 3e-30
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 129 3e-30
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 129 3e-30
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 30 1.7
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 30 2.2
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 30 2.2
Z49068-4|CAC42319.1| 705|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z49068-3|CAA88862.1| 650|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 29 2.9
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 29 2.9
AF045639-1|AAC02565.1| 672|Caenorhabditis elegans Hypothetical ... 29 5.1
Z81449-11|CAD44106.2| 410|Caenorhabditis elegans Hypothetical p... 28 6.8
Z81449-10|CAB03766.4| 419|Caenorhabditis elegans Hypothetical p... 28 6.8
Z48241-6|CAD44100.2| 410|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z48241-5|CAA88286.4| 419|Caenorhabditis elegans Hypothetical pr... 28 6.8
U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z35637-6|CAA84685.1| 341|Caenorhabditis elegans Hypothetical pr... 28 9.0
U80454-5|AAB37877.1| 368|Caenorhabditis elegans Hypothetical pr... 28 9.0
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 129 bits (311), Expect = 3e-30
Identities = 78/252 (30%), Positives = 132/252 (52%), Gaps = 7/252 (2%)
Frame = +1
Query: 55 GFFHLRVSKDSXKSPSFVTMXGQYXFLKAPFGLSICPKVFTXFISIIFRDLITRGI-VIV 231
GF+ + + + S + +F + + PFGL I P +F + I DL+ G+ V
Sbjct: 1122 GFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLL--GVCAFV 1179
Query: 232 FIDDLLIPAINEAQAVARLREVLQLAMEYGLQINWKKSQLLVRKVEYLGHVIEGGTVMPS 411
++DDLLI + + Q + ++E L + G+++ K + ++VEYLGH + V
Sbjct: 1180 YVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQ 1239
Query: 412 SGKTDAVIKFPEPRNEKQLQSFLGLCSYFRKYIQNYAVIARPLTDMLRKDKKFEFNNEHR 591
KTD + +F P N K+LQSFLGL Y+RK+I N+A IA LT ++ + + E
Sbjct: 1240 EVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQE 1299
Query: 592 LVFNMLKEKLTSKPVLKIYEPKAETE------LHTDASSIAYAAILLQKDDNSELHPVHY 753
+ F LK+ + PVL + +A + ++TDAS A+L Q+ + + HP+ +
Sbjct: 1300 IAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAF 1359
Query: 754 MSKRTTDAXSKY 789
SK + A ++Y
Sbjct: 1360 ASKALSPAETRY 1371
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 129 bits (311), Expect = 3e-30
Identities = 78/252 (30%), Positives = 132/252 (52%), Gaps = 7/252 (2%)
Frame = +1
Query: 55 GFFHLRVSKDSXKSPSFVTMXGQYXFLKAPFGLSICPKVFTXFISIIFRDLITRGI-VIV 231
GF+ + + + S + +F + + PFGL I P +F + I DL+ G+ V
Sbjct: 1025 GFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLL--GVCAFV 1082
Query: 232 FIDDLLIPAINEAQAVARLREVLQLAMEYGLQINWKKSQLLVRKVEYLGHVIEGGTVMPS 411
++DDLLI + + Q + ++E L + G+++ K + ++VEYLGH + V
Sbjct: 1083 YVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQ 1142
Query: 412 SGKTDAVIKFPEPRNEKQLQSFLGLCSYFRKYIQNYAVIARPLTDMLRKDKKFEFNNEHR 591
KTD + +F P N K+LQSFLGL Y+RK+I N+A IA LT ++ + + E
Sbjct: 1143 EVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQE 1202
Query: 592 LVFNMLKEKLTSKPVLKIYEPKAETE------LHTDASSIAYAAILLQKDDNSELHPVHY 753
+ F LK+ + PVL + +A + ++TDAS A+L Q+ + + HP+ +
Sbjct: 1203 IAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAF 1262
Query: 754 MSKRTTDAXSKY 789
SK + A ++Y
Sbjct: 1263 ASKALSPAETRY 1274
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 129 bits (311), Expect = 3e-30
Identities = 78/252 (30%), Positives = 132/252 (52%), Gaps = 7/252 (2%)
Frame = +1
Query: 55 GFFHLRVSKDSXKSPSFVTMXGQYXFLKAPFGLSICPKVFTXFISIIFRDLITRGI-VIV 231
GF+ + + + S + +F + + PFGL I P +F + I DL+ G+ V
Sbjct: 1036 GFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLL--GVCAFV 1093
Query: 232 FIDDLLIPAINEAQAVARLREVLQLAMEYGLQINWKKSQLLVRKVEYLGHVIEGGTVMPS 411
++DDLLI + + Q + ++E L + G+++ K + ++VEYLGH + V
Sbjct: 1094 YVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQ 1153
Query: 412 SGKTDAVIKFPEPRNEKQLQSFLGLCSYFRKYIQNYAVIARPLTDMLRKDKKFEFNNEHR 591
KTD + +F P N K+LQSFLGL Y+RK+I N+A IA LT ++ + + E
Sbjct: 1154 EVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQE 1213
Query: 592 LVFNMLKEKLTSKPVLKIYEPKAETE------LHTDASSIAYAAILLQKDDNSELHPVHY 753
+ F LK+ + PVL + +A + ++TDAS A+L Q+ + + HP+ +
Sbjct: 1214 IAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAF 1273
Query: 754 MSKRTTDAXSKY 789
SK + A ++Y
Sbjct: 1274 ASKALSPAETRY 1285
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 232 FIDDLLIPAINEAQAVARLREVLQLAMEYGLQINWKKSQLL 354
F DD+++ A + A L+E++Q E GL+IN K+++L
Sbjct: 629 FADDIVLIANHPNTASKMLQELVQKCSEVGLEINTGKTKVL 669
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 232 FIDDLLIPAINEAQAVARLREVLQLAMEYGLQINWKKSQLL 354
F DD+++ A + A L+E++Q E GL+IN K+++L
Sbjct: 151 FADDIVLIANHPNTASKMLQELVQKCSEVGLEINTGKTKVL 191
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 491 EQSPKKLCSCFSFLGSGNLMTAS 423
E+ P+KL FSF SGNL+T S
Sbjct: 335 EEIPEKLIELFSFSASGNLVTVS 357
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 491 EQSPKKLCSCFSFLGSGNLMTAS 423
E+ P+KL FSF SGNL+T S
Sbjct: 420 EEIPEKLIELFSFSASGNLVTVS 442
>Z49068-4|CAC42319.1| 705|Caenorhabditis elegans Hypothetical
protein K01C8.3b protein.
Length = 705
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 499 RKYIQNYAVIARPLTDMLRKDKKFEFNNE 585
+KYI+ + +A+ + +LR D KFE NE
Sbjct: 450 QKYIREHVRLAKKMETLLRADAKFEIVNE 478
>Z49068-3|CAA88862.1| 650|Caenorhabditis elegans Hypothetical
protein K01C8.3a protein.
Length = 650
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 499 RKYIQNYAVIARPLTDMLRKDKKFEFNNE 585
+KYI+ + +A+ + +LR D KFE NE
Sbjct: 450 QKYIREHVRLAKKMETLLRADAKFEIVNE 478
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 232 FIDDLLIPAINEAQAVARLREVLQLAMEYGLQINWKKSQLL 354
F DD+++ A + A L+E++Q E GL+IN K+++L
Sbjct: 800 FADDIVLIANHPNIASKMLQELVQKCSEVGLEINTGKTKVL 840
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 232 FIDDLLIPAINEAQAVARLREVLQLAMEYGLQINWKKSQLL 354
F DD+++ A + A L+E++Q E GL+IN K+++L
Sbjct: 539 FADDIVLIANHPNIASKMLQELVQKCSEVGLEINTGKTKVL 579
>AF045639-1|AAC02565.1| 672|Caenorhabditis elegans Hypothetical
protein B0212.3 protein.
Length = 672
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/96 (22%), Positives = 41/96 (42%)
Frame = +1
Query: 496 FRKYIQNYAVIARPLTDMLRKDKKFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELH 675
+ K Q I R +TD K++ ++ + K+ K + E +
Sbjct: 381 YHKMHQKRRKIIRSVTDETSLVAKWKRKSDSYYEMYQKRRKIGEKELSDTAEVEEVAPYD 440
Query: 676 TDASSIAYAAILLQKDDNSELHPVHYMSKRTTDAXS 783
+D ++ Y L +D +++L+P + MS TTD S
Sbjct: 441 SDYGNV-YVENLEAEDQDTQLNPFNAMSDLTTDGPS 475
>Z81449-11|CAD44106.2| 410|Caenorhabditis elegans Hypothetical
protein C32A3.3b protein.
Length = 410
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 541 TDMLRKDKKF--EFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAYAAILL 714
TD KD + + NNE R + L+E + K +LK + E EL + L
Sbjct: 232 TDRACKDMQLANQDNNEPRFTLSELREVIKEKNILKGRVMELEEELDNFKPGAKKEIMRL 291
Query: 715 QKDDNSELHPV 747
DD+ + +P+
Sbjct: 292 DDDDDFDRNPL 302
>Z81449-10|CAB03766.4| 419|Caenorhabditis elegans Hypothetical
protein C32A3.3a protein.
Length = 419
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 541 TDMLRKDKKF--EFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAYAAILL 714
TD KD + + NNE R + L+E + K +LK + E EL + L
Sbjct: 241 TDRACKDMQLANQDNNEPRFTLSELREVIKEKNILKGRVMELEEELDNFKPGAKKEIMRL 300
Query: 715 QKDDNSELHPV 747
DD+ + +P+
Sbjct: 301 DDDDDFDRNPL 311
>Z48241-6|CAD44100.2| 410|Caenorhabditis elegans Hypothetical
protein C32A3.3b protein.
Length = 410
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 541 TDMLRKDKKF--EFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAYAAILL 714
TD KD + + NNE R + L+E + K +LK + E EL + L
Sbjct: 232 TDRACKDMQLANQDNNEPRFTLSELREVIKEKNILKGRVMELEEELDNFKPGAKKEIMRL 291
Query: 715 QKDDNSELHPV 747
DD+ + +P+
Sbjct: 292 DDDDDFDRNPL 302
>Z48241-5|CAA88286.4| 419|Caenorhabditis elegans Hypothetical
protein C32A3.3a protein.
Length = 419
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 541 TDMLRKDKKF--EFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAYAAILL 714
TD KD + + NNE R + L+E + K +LK + E EL + L
Sbjct: 241 TDRACKDMQLANQDNNEPRFTLSELREVIKEKNILKGRVMELEEELDNFKPGAKKEIMRL 300
Query: 715 QKDDNSELHPV 747
DD+ + +P+
Sbjct: 301 DDDDDFDRNPL 311
>U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical
protein K02E10.1 protein.
Length = 218
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/91 (23%), Positives = 44/91 (48%)
Frame = +1
Query: 469 QSFLGLCSYFRKYIQNYAVIARPLTDMLRKDKKFEFNNEHRLVFNMLKEKLTSKPVLKIY 648
+SF L Y+ K I+ +A P ++ K + + E ++ F+ EKL S+ + +Y
Sbjct: 92 KSFENLEKYWLKEIKQHAP---PNAVLMLVGNKADMDQERKVDFDRA-EKLASRLGVSLY 147
Query: 649 EPKAETELHTDASSIAYAAILLQKDDNSELH 741
E A+T ++ + + A + ++ +H
Sbjct: 148 EVSAKTGINCEEAFHTLTAAMRERITAGSMH 178
>Z35637-6|CAA84685.1| 341|Caenorhabditis elegans Hypothetical
protein C03C10.1 protein.
Length = 341
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 703 PHMLYLRHLYEVLFLLLVHKFSIQVYWS 620
P +YLR L+ +LF L H++ W+
Sbjct: 271 PDYMYLRQLFRILFRTLNHQYDYTFDWT 298
>U80454-5|AAB37877.1| 368|Caenorhabditis elegans Hypothetical
protein T16A1.8 protein.
Length = 368
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 340 KSQLLVRKVEYLGHVIEGGTVMPSSGKTDAVIKFPEPRN 456
++++ + KVE +++ + K AV KFP+P+N
Sbjct: 308 RNEVEIGKVEVRTYIVSKDGIQTDPEKIKAVSKFPQPKN 346
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,102,998
Number of Sequences: 27780
Number of extensions: 322980
Number of successful extensions: 785
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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