Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C18
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20850.1 68415.m02457 leucine-rich repeat protein kinase, put...    34   0.13 
At5g53380.1 68418.m06633 hypothetical protein                          31   0.68 
At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal hydrolase-r...    31   0.68 
At5g07130.1 68418.m00813 laccase, putative / diphenol oxidase, p...    29   2.7  
At5g48430.1 68418.m05988 expressed protein low similarity to ext...    29   4.8  
At2g30210.1 68415.m03674 laccase, putative / diphenol oxidase, p...    29   4.8  
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ...    28   6.3  
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ...    28   6.3  

>At2g20850.1 68415.m02457 leucine-rich repeat protein kinase,
           putative contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain
          Length = 772

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 482 PKKLCSCFSFLGSGNLMTASVFPDDGITVPPSITCPKYSTF 360
           P+KL S  +F+  GNL   ++ P      PPS T PK   F
Sbjct: 230 PEKLLSIPNFIKGGNLFNVTIAPSPSPETPPSPTSPKRPFF 270


>At5g53380.1 68418.m06633 hypothetical protein
          Length = 483

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 532 RPLTDMLRKDKKFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKA--ETELHTDASSIAYAA 705
           +PL DML KD K  + N   LVF      L + P++ + + K+  + + H+  + + Y+ 
Sbjct: 321 QPLEDMLAKDSKCRWGNYDSLVFVPFSISLETDPLVPLLKAKSIMDRKKHSLVAPMHYSI 380

Query: 706 I 708
           I
Sbjct: 381 I 381


>At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1149

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 505 YIQNYAVIARPLTDMLRKDKKFEFNNEHRLVFNMLKEKLTS--KPVLKIYEPKAETELHT 678
           Y +N + +AR +   L+KD   EFN   R    M+    TS      K++EPK  ++L  
Sbjct: 125 YPENTSPVARSMLQELKKDMNKEFNTLIRDAERMIAGAKTSPLSSESKVWEPKKSSDLVD 184

Query: 679 D 681
           D
Sbjct: 185 D 185


>At5g07130.1 68418.m00813 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 484

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 294 FSQSCNSLSFIYSRYQQIIDKYYDNTP 214
           F+ S N++SF++ +   I+  YY  TP
Sbjct: 300 FTASINNVSFVFPKQNSIMQAYYQGTP 326


>At5g48430.1 68418.m05988 expressed protein low similarity to
           extracellular dermal glycoprotein EDGP precursor [Daucus
           carota] GI:285741, SP|P13917 Basic 7S globulin precursor
           {Glycine max}; expression supported by MPSS
          Length = 406

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 473 LCSCFSFLGSGNLMTASVFPDDGI--TVPPSITCPKYSTFLTNN*DFFQFICNPYSIANC 300
           L  C     + + ++A+ +P   +  TV  +   P ++  L  N +FF  I  PY +  C
Sbjct: 6   LVLCLILFFTYSYVSANYYPPKALVSTVSKNTILPIFTFTLNTNQEFFIHIGGPYLVRKC 65

Query: 299 N 297
           N
Sbjct: 66  N 66


>At2g30210.1 68415.m03674 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 570

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 294 FSQSCNSLSFIYSRYQQIIDKYYDNTP 214
           F+ S N++SF+  R   ++  YY  TP
Sbjct: 387 FAASMNNMSFVLPRSNSVMQAYYQGTP 413


>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
           XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 1012

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +1

Query: 418 KTDAVIKFPEPRNEKQLQSFLGLCSYFRKYIQNYAVIARPLTDMLRKDKKFEFNNEHRLV 597
           + D V+K+ E         + G+CS+   Y  +YA  A  L  + + D KFE  +  +  
Sbjct: 551 RRDVVLKYTEGLCWIMHYYYHGVCSWNWFYPYHYAPFASDLKGLEKLDIKFELGSPFK-P 609

Query: 598 FNMLKEKLTS 627
           FN L   L S
Sbjct: 610 FNQLLAVLPS 619


>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
           XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
          Length = 1020

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +1

Query: 418 KTDAVIKFPEPRNEKQLQSFLGLCSYFRKYIQNYAVIARPLTDMLRKDKKFEFNNEHRLV 597
           + D V+K+ E           G+CS+   Y  +YA  A  L D+   D KFE     +  
Sbjct: 559 RKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLKDLGEMDIKFELGTPFK-P 617

Query: 598 FNML 609
           FN L
Sbjct: 618 FNQL 621


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,746,042
Number of Sequences: 28952
Number of extensions: 279450
Number of successful extensions: 614
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)