Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C16
         (877 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47437| Best HMM Match : GlcNAc_2-epim (HMM E-Value=2.1)             30   2.8  
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     29   3.7  
SB_14979| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-32)                 29   6.5  
SB_51563| Best HMM Match : C1_4 (HMM E-Value=2)                        29   6.5  
SB_4394| Best HMM Match : 7tm_1 (HMM E-Value=1.69978e-42)              29   6.5  
SB_4393| Best HMM Match : 7tm_1 (HMM E-Value=6.40393e-43)              29   6.5  
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)                   28   8.6  
SB_57813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_47437| Best HMM Match : GlcNAc_2-epim (HMM E-Value=2.1)
          Length = 786

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 428 QRLGRCCRQFLYYEDRDYHHNKANFYSSSICKGMPS 321
           ++    CR  L Y  RD  H    FYS+     +PS
Sbjct: 311 EKFAETCRDILLYVMRDLSHKLGGFYSAEDADSLPS 346


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 160 VSTDSAYSCSWRYILLLLPDNKKSQRSWQWSNKPLYQEGH 279
           +S   A SC +RY   ++  +     SW W  +  Y  GH
Sbjct: 336 ISVRLALSCGYRYGTRIISGSDAQPNSWPWMVQINYNNGH 375


>SB_14979| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-32)
          Length = 271

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 330 PFADAGGVKIGLIVMVVTVLIIKKLATTPAQSLSDTNQPTKYKQINSK 473
           PFAD     +G  V+  T   ++ LA T         +P+KY  + SK
Sbjct: 94  PFADIACQYMGYSVLCATAASVQTLAWTAVNRFYRVVKPSKYNSVFSK 141


>SB_51563| Best HMM Match : C1_4 (HMM E-Value=2)
          Length = 322

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 330 PFADAGGVKIGLIVMVVTVLIIKKLATTPAQSLSDTNQ-PTKYKQINSKCSFQKSYV 497
           PF+    VK+GL+      L +K+ +T P +  S+ +  P K   I    +F K Y+
Sbjct: 58  PFSPGAMVKVGLLYNRNGELKVKRGSTLPIEVKSNVSDVPLKRAAITKHLAFNKKYM 114


>SB_4394| Best HMM Match : 7tm_1 (HMM E-Value=1.69978e-42)
          Length = 331

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 330 PFADAGGVKIGLIVMVVTVLIIKKLATTPAQSLSDTNQPTKYKQINSK 473
           PFAD     +G  V+  T   ++ LA T         +P+KY  + SK
Sbjct: 94  PFADIACQYMGYSVLCATAASVQTLAWTAVNRFYRVVKPSKYNSVFSK 141


>SB_4393| Best HMM Match : 7tm_1 (HMM E-Value=6.40393e-43)
          Length = 521

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 330 PFADAGGVKIGLIVMVVTVLIIKKLATTPAQSLSDTNQPTKYKQINSK 473
           PFAD     +G  V+  T   ++ LA T         +P+KY  + SK
Sbjct: 94  PFADIACQYMGYSVLCATAASVQTLAWTAVNRFYRVVKPSKYNSVFSK 141


>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
          Length = 1468

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -2

Query: 771  PVINS*ILDIFCCIILNKYKTIVFLTLTISRY*RVTIHILNMTLHNIESC 622
            P++   ++ IF  +I+N   TIVF+T+ I+      + ++N+   +   C
Sbjct: 1117 PIVIIIVIIIFIIVIINIIATIVFITIVITTTPIFVVVVVNIIFFSESLC 1166


>SB_57813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 390 IIKKLATTPAQSLSDTNQPTKYKQINSKCSFQKSYVKTNYCIVLLKIKHF 539
           I+K    TP     +T  PT Y+ I++  SF + + K  Y  ++  I+ F
Sbjct: 85  ILKISKVTPVDKGGETFDPTNYRPISTLSSFSQIFEKLVYKQLINYIEKF 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,644,016
Number of Sequences: 59808
Number of extensions: 442936
Number of successful extensions: 1014
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)