Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C16
         (877 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    27   0.57 
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    27   0.57 
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   9.2  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 0.57
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 82  NHSQLSVELANSXFCWRMVSSWS*RLVSTDSAYSCSWRYILLLL 213
           +HS  S E+  S FC R ++  + +++   +     W+Y+ ++L
Sbjct: 462 SHSVCSTEVHRSCFCVRFIAEHT-KMLEDSTKVKEDWKYVAMVL 504


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 0.57
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 82  NHSQLSVELANSXFCWRMVSSWS*RLVSTDSAYSCSWRYILLLL 213
           +HS  S E+  S FC R ++  + +++   +     W+Y+ ++L
Sbjct: 462 SHSVCSTEVHRSCFCVRFIAEHT-KMLEDSTKVKEDWKYVAMVL 504


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 338 RCWRSKNWPYCDGSHGPHNKETG 406
           + W   +  Y DG+  PHN++ G
Sbjct: 823 KLWDGYSLLYVDGNDYPHNQDLG 845


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 783,245
Number of Sequences: 2352
Number of extensions: 16480
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93853377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)