Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C16
         (877 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537971-1|CAD97935.1|  150|Homo sapiens hypothetical protein pr...   118   2e-26
BC032300-1|AAH32300.1|  135|Homo sapiens CDGSH iron sulfur domai...   118   2e-26
BC059168-1|AAH59168.1|  108|Homo sapiens CDGSH iron sulfur domai...    96   1e-19
BC008474-1|AAH08474.1|  108|Homo sapiens zinc finger, CDGSH-type...    96   1e-19
BC007043-1|AAH07043.1|  108|Homo sapiens zinc finger, CDGSH-type...    96   1e-19
BC005962-1|AAH05962.1|  108|Homo sapiens zinc finger, CDGSH-type...    96   1e-19
AY960578-1|AAY32336.1|  108|Homo sapiens zinc finger CDGSH-type ...    96   1e-19
AF220049-1|AAF67642.1|  108|Homo sapiens uncharacterized hematop...    96   1e-19
S66431-1|AAB28544.1| 1722|Homo sapiens retinoblastoma binding pr...    31   5.5  

>BX537971-1|CAD97935.1|  150|Homo sapiens hypothetical protein
           protein.
          Length = 150

 Score =  118 bits (285), Expect = 2e-26
 Identities = 57/128 (44%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
 Frame = +2

Query: 62  VSNLVKVTIPNYLSSLPIPXSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQT-IKKARE 238
           V+ +VKV +P YL  LP+P S+ G+ RL V +WL L+P   V+  + Y + +  + K ++
Sbjct: 21  VARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQ 80

Query: 239 AGSGQINPCIRKDINKVVDFIDIEDIT-EKASLCRCWRSKNWPYCDGSHGPHNKETGDNT 415
                IN  I+K+  KVV+ I+IED+   KA+ CRCWRSK +P CDGSH  HN+ TGDN 
Sbjct: 81  QKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNV 140

Query: 416 GPVVVRHK 439
           GP++++ K
Sbjct: 141 GPLILKKK 148


>BC032300-1|AAH32300.1|  135|Homo sapiens CDGSH iron sulfur domain 2
           protein.
          Length = 135

 Score =  118 bits (285), Expect = 2e-26
 Identities = 57/128 (44%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
 Frame = +2

Query: 62  VSNLVKVTIPNYLSSLPIPXSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQT-IKKARE 238
           V+ +VKV +P YL  LP+P S+ G+ RL V +WL L+P   V+  + Y + +  + K ++
Sbjct: 6   VARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQ 65

Query: 239 AGSGQINPCIRKDINKVVDFIDIEDIT-EKASLCRCWRSKNWPYCDGSHGPHNKETGDNT 415
                IN  I+K+  KVV+ I+IED+   KA+ CRCWRSK +P CDGSH  HN+ TGDN 
Sbjct: 66  QKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNV 125

Query: 416 GPVVVRHK 439
           GP++++ K
Sbjct: 126 GPLILKKK 133


>BC059168-1|AAH59168.1|  108|Homo sapiens CDGSH iron sulfur domain 1
           protein.
          Length = 108

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = +2

Query: 155 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 334
           +W+A +        I Y +Y+            IN  I+KD  K+V   D+ED+ +KA  
Sbjct: 12  EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71

Query: 335 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 439
           CRCWRSK +P+CDG+H  HN+ETGDN GP++++ K
Sbjct: 72  CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106


>BC008474-1|AAH08474.1|  108|Homo sapiens zinc finger, CDGSH-type
           domain 1 protein.
          Length = 108

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = +2

Query: 155 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 334
           +W+A +        I Y +Y+            IN  I+KD  K+V   D+ED+ +KA  
Sbjct: 12  EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71

Query: 335 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 439
           CRCWRSK +P+CDG+H  HN+ETGDN GP++++ K
Sbjct: 72  CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106


>BC007043-1|AAH07043.1|  108|Homo sapiens zinc finger, CDGSH-type
           domain 1 protein.
          Length = 108

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = +2

Query: 155 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 334
           +W+A +        I Y +Y+            IN  I+KD  K+V   D+ED+ +KA  
Sbjct: 12  EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71

Query: 335 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 439
           CRCWRSK +P+CDG+H  HN+ETGDN GP++++ K
Sbjct: 72  CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106


>BC005962-1|AAH05962.1|  108|Homo sapiens zinc finger, CDGSH-type
           domain 1 protein.
          Length = 108

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = +2

Query: 155 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 334
           +W+A +        I Y +Y+            IN  I+KD  K+V   D+ED+ +KA  
Sbjct: 12  EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71

Query: 335 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 439
           CRCWRSK +P+CDG+H  HN+ETGDN GP++++ K
Sbjct: 72  CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106


>AY960578-1|AAY32336.1|  108|Homo sapiens zinc finger CDGSH-type
           domain 1 protein.
          Length = 108

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = +2

Query: 155 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 334
           +W+A +        I Y +Y+            IN  I+KD  K+V   D+ED+ +KA  
Sbjct: 12  EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71

Query: 335 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 439
           CRCWRSK +P+CDG+H  HN+ETGDN GP++++ K
Sbjct: 72  CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106


>AF220049-1|AAF67642.1|  108|Homo sapiens uncharacterized
           hematopoietic stem/progenitor cells protein MDS029
           protein.
          Length = 108

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = +2

Query: 155 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 334
           +W+A +        I Y +Y+            IN  I+KD  K+V   D+ED+ +KA  
Sbjct: 12  EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71

Query: 335 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 439
           CRCWRSK +P+CDG+H  HN+ETGDN GP++++ K
Sbjct: 72  CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106


>S66431-1|AAB28544.1| 1722|Homo sapiens retinoblastoma binding protein
            2 protein.
          Length = 1722

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 260  PCIRKDINKVVDFIDIEDITEKASLCRCWRSK-NWPYCDG 376
            PC  K +  V    +I++I+ K+ LC C+  K +W  CDG
Sbjct: 1623 PCKDKGVVFVTKKREIKNISFKSVLCDCFSKKVDWVQCDG 1662


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,199,120
Number of Sequences: 237096
Number of extensions: 2148189
Number of successful extensions: 3866
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3862
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)