Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C16
         (877 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY095084-1|AAM11412.1|  133|Drosophila melanogaster RE49709p pro...   185   8e-47
AY071722-1|AAL49344.1|  133|Drosophila melanogaster RH38554p pro...   185   8e-47
AE014297-4356|AAF56878.1|  133|Drosophila melanogaster CG1458-PA...   185   8e-47
X91245-1|CAA62627.1|  495|Drosophila melanogaster muscle LIM pro...    33   0.68 
BT003202-1|AAO24957.1|  495|Drosophila melanogaster RE40142p pro...    33   0.68 
AF090832-1|AAC61591.1|  495|Drosophila melanogaster muscle LIM p...    33   0.68 
AE014297-561|AAF54064.1|  495|Drosophila melanogaster CG1019-PB,...    33   0.68 
AE014297-560|AAF54063.1|  495|Drosophila melanogaster CG1019-PA,...    33   0.68 
AJ556820-1|CAD89219.3| 1641|Drosophila melanogaster Tho2 protein...    31   1.6  
AE014134-342|AAF51302.2| 1641|Drosophila melanogaster CG31671-PA...    31   1.6  
BT011450-1|AAR99108.1|  228|Drosophila melanogaster RE41058p pro...    30   4.8  
AE014134-3384|AAN11115.1|  381|Drosophila melanogaster CG31622-P...    30   4.8  
AY128477-1|AAM75070.1|  939|Drosophila melanogaster RE39339p pro...    29   6.4  
AE014298-628|AAF45943.3|  939|Drosophila melanogaster CG3626-PA ...    29   6.4  

>AY095084-1|AAM11412.1|  133|Drosophila melanogaster RE49709p
           protein.
          Length = 133

 Score =  185 bits (450), Expect = 8e-47
 Identities = 81/132 (61%), Positives = 100/132 (75%), Gaps = 5/132 (3%)
 Frame = +2

Query: 53  MYVVSNLVKVTIPNYLSSLPIPXSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQTIKKA 232
           M  +S+LVK ++PNYLSSLP+P S+GGWF+L  KDWLALIPPTVVV G+ Y +Y     A
Sbjct: 1   MEPISHLVKSSLPNYLSSLPVPDSIGGWFKLSFKDWLALIPPTVVVAGLGYTAYLAYCPA 60

Query: 233 REAG-----SGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNK 397
             A      SG+ N  IRK+  KVVD ID+EDI EKA+ CRCW++KNWPYCDGSHG HNK
Sbjct: 61  ARASCAAKNSGRCNNHIRKNEPKVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNK 120

Query: 398 ETGDNTGPVVVR 433
           +TGDN GP+V++
Sbjct: 121 QTGDNVGPIVIK 132


>AY071722-1|AAL49344.1|  133|Drosophila melanogaster RH38554p
           protein.
          Length = 133

 Score =  185 bits (450), Expect = 8e-47
 Identities = 81/132 (61%), Positives = 100/132 (75%), Gaps = 5/132 (3%)
 Frame = +2

Query: 53  MYVVSNLVKVTIPNYLSSLPIPXSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQTIKKA 232
           M  +S+LVK ++PNYLSSLP+P S+GGWF+L  KDWLALIPPTVVV G+ Y +Y     A
Sbjct: 1   MEPISHLVKSSLPNYLSSLPVPDSIGGWFKLSFKDWLALIPPTVVVAGLGYTAYLAYCPA 60

Query: 233 REAG-----SGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNK 397
             A      SG+ N  IRK+  KVVD ID+EDI EKA+ CRCW++KNWPYCDGSHG HNK
Sbjct: 61  ARASCAAKNSGRCNNHIRKNEPKVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNK 120

Query: 398 ETGDNTGPVVVR 433
           +TGDN GP+V++
Sbjct: 121 QTGDNVGPIVIK 132


>AE014297-4356|AAF56878.1|  133|Drosophila melanogaster CG1458-PA
           protein.
          Length = 133

 Score =  185 bits (450), Expect = 8e-47
 Identities = 81/132 (61%), Positives = 100/132 (75%), Gaps = 5/132 (3%)
 Frame = +2

Query: 53  MYVVSNLVKVTIPNYLSSLPIPXSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQTIKKA 232
           M  +S+LVK ++PNYLSSLP+P S+GGWF+L  KDWLALIPPTVVV G+ Y +Y     A
Sbjct: 1   MEPISHLVKSSLPNYLSSLPVPDSIGGWFKLSFKDWLALIPPTVVVAGLGYTAYLAYCPA 60

Query: 233 REAG-----SGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNK 397
             A      SG+ N  IRK+  KVVD ID+EDI EKA+ CRCW++KNWPYCDGSHG HNK
Sbjct: 61  ARASCAAKNSGRCNNHIRKNEPKVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNK 120

Query: 398 ETGDNTGPVVVR 433
           +TGDN GP+V++
Sbjct: 121 QTGDNVGPIVIK 132


>X91245-1|CAA62627.1|  495|Drosophila melanogaster muscle LIM
           protein protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +2

Query: 191 GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 370
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 371 DGSHG 385
            G HG
Sbjct: 280 -GPHG 283


>BT003202-1|AAO24957.1|  495|Drosophila melanogaster RE40142p
           protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +2

Query: 191 GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 370
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 371 DGSHG 385
            G HG
Sbjct: 280 -GPHG 283


>AF090832-1|AAC61591.1|  495|Drosophila melanogaster muscle LIM
           protein at 84B protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +2

Query: 191 GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 370
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 371 DGSHG 385
            G HG
Sbjct: 280 -GPHG 283


>AE014297-561|AAF54064.1|  495|Drosophila melanogaster CG1019-PB,
           isoform B protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +2

Query: 191 GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 370
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 371 DGSHG 385
            G HG
Sbjct: 280 -GPHG 283


>AE014297-560|AAF54063.1|  495|Drosophila melanogaster CG1019-PA,
           isoform A protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +2

Query: 191 GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 370
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 371 DGSHG 385
            G HG
Sbjct: 280 -GPHG 283


>AJ556820-1|CAD89219.3| 1641|Drosophila melanogaster Tho2 protein
           protein.
          Length = 1641

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 337 AKGCLLSYILNVNKVY-NFINVLPDTRVYLTTASFSGFFYCLVRVVRYT 194
           A G L  YIL   ++Y N I  + D   YLT  SF    YC++  +  T
Sbjct: 636 APGLLFDYILLQIQIYDNLIGPVCDLLKYLTALSFDCLGYCIIESLTLT 684


>AE014134-342|AAF51302.2| 1641|Drosophila melanogaster CG31671-PA
           protein.
          Length = 1641

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 337 AKGCLLSYILNVNKVY-NFINVLPDTRVYLTTASFSGFFYCLVRVVRYT 194
           A G L  YIL   ++Y N I  + D   YLT  SF    YC++  +  T
Sbjct: 636 APGLLFDYILLQIQIYDNLIGPVCDLLKYLTALSFDCLGYCIIESLTLT 684


>BT011450-1|AAR99108.1|  228|Drosophila melanogaster RE41058p
           protein.
          Length = 228

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 500 FYITFLKTTLAIYLFVFSWLVCV*QRLGRCCRQ 402
           F+I F    + + +F+ +W+ C+   LG+CC++
Sbjct: 28  FFICFAAVIVGVSVFLGTWIFCI---LGKCCQR 57


>AE014134-3384|AAN11115.1|  381|Drosophila melanogaster CG31622-PC,
           isoform C protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -1

Query: 334 KGCLLSYILNVNKVYNFINVLPDTRVYLTTASFSGFFYCLVRVVRYTANYN 182
           K C+  ++ + ++++  I  L     YL T+   G ++C+V +VR   ++N
Sbjct: 146 KTCIFEWLTDASRLF-VITSLGFPLRYLVTSFTMGTYFCMVHIVRLVLDWN 195


>AY128477-1|AAM75070.1|  939|Drosophila melanogaster RE39339p
           protein.
          Length = 939

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 196 YILLLLPDNKKSQRSWQWSNKPLYQEG 276
           Y+ LLL D+      W W  +P+Y++G
Sbjct: 802 YVQLLLNDHDHEVDMWCWGGEPIYRDG 828


>AE014298-628|AAF45943.3|  939|Drosophila melanogaster CG3626-PA
           protein.
          Length = 939

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 196 YILLLLPDNKKSQRSWQWSNKPLYQEG 276
           Y+ LLL D+      W W  +P+Y++G
Sbjct: 802 YVQLLLNDHDHEVDMWCWGGEPIYRDG 828


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,301,552
Number of Sequences: 53049
Number of extensions: 640878
Number of successful extensions: 1547
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)