Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C15
         (789 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    25   0.69 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.1  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   6.4  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    22   6.4  

>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 364 RCVPNRRSMGEKRHRPSSQHTVCPRS*VLQTRGMER 471
           +C P+   +  KRH P + HT C +    Q  G ++
Sbjct: 55  KCTPDGAEL--KRHLPDALHTECSKCSETQKNGSKK 88


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 201 SSPGGNLAPRTPS 163
           SSP GN+ P TPS
Sbjct: 108 SSPSGNVPPLTPS 120


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 268 RARLQLVDELAKNSAVLEDILK 203
           RAR+Q + E AKN  + +D+ K
Sbjct: 130 RARMQDLTEGAKNMTINDDLEK 151


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 433 GKQCADYLGDVFFL 392
           GK C  Y+ D+F+L
Sbjct: 196 GKNCVTYVFDLFYL 209


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,355
Number of Sequences: 336
Number of extensions: 4383
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)