BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P02_F_C15 (789 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 69 8e-13 SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 68 1e-12 SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 31 0.14 SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 29 0.57 SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 27 2.3 SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 5.4 SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 25 9.4 SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 25 9.4 >SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein Stg1|Schizosaccharomyces pombe|chr 1|||Manual Length = 174 Score = 68.9 bits (161), Expect = 8e-13 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 2/162 (1%) Frame = +2 Query: 140 EKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGGQFKMMENI 319 EKEA+EWIE L K D L+ G +LC++ + ++ + + F MENI Sbjct: 6 EKEAREWIEETLHTKLNAQLDLLDQLQSGVILCRICKEALGANI-RYKESNMPFVQMENI 64 Query: 320 TNF-QSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESYRHAEWSGPCLGPKPA 496 + F A + VP D+FQT DL+E+++ QV+ ++ + R + + LGPK A Sbjct: 65 SAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLA 124 Query: 497 DECKRDFS-DEVLKAGQTVIGLQAGSNKGATQSGQNLGAGRK 619 ++ R FS + + + V LQ GS TQ + + R+ Sbjct: 125 EKKPRVFSAQQQREFREGVNSLQYGSFDMPTQGTEKIAFSRR 166 >SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual Length = 1489 Score = 68.1 bits (159), Expect = 1e-12 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 1/103 (0%) Frame = +2 Query: 131 LXKEKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGG-QFKM 307 L + EA++WIE LG P FE L++G VL L+ K +P + KI + QF+ Sbjct: 41 LCRVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRH 100 Query: 308 MENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 436 +NI F I G+P+I F+ D++E K++ +V+ + AL Sbjct: 101 SDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143 >SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr 2|||Manual Length = 962 Score = 31.5 bits (68), Expect = 0.14 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 4/101 (3%) Frame = +2 Query: 146 EAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGGQFKMMENITN 325 EA++W+E ++ + F D L +G VLCQL K P + ++++ E T Sbjct: 69 EAKKWLEEETNNEYQNLDDFVDALVNGKVLCQLAFKYYP---KLASNWKPRYQISERNTV 125 Query: 326 FQSA----IKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 436 + +A + G+ F+T DL + +I +V+ L AL Sbjct: 126 YLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166 >SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 992 Score = 29.5 bits (63), Expect = 0.57 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Frame = -1 Query: 264 PGFSLLMSWQR----TVPSLRTSSNSSPGG--NLA-PRTPSIHSWASFSFXRVALGSDLS 106 PG L QR T P L TSS++ PGG N+A T S+ +S ++ + +S Sbjct: 210 PGVGTLQQPQRAGSDTFPDLNTSSSNQPGGEPNVASANTHSLEILSSSAYHPSGSSNGIS 269 Query: 105 ANLT 94 A LT Sbjct: 270 AGLT 273 >SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 922 Score = 27.5 bits (58), Expect = 2.3 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Frame = +2 Query: 65 SHNHTTCLWNVKFALRSLPS-----ATLXKEKEAQ-EWIEGVLGAKF-PPGELFEDVLKD 223 S +HT LW++K + +P TL E+ Q ++ + VL K P G L D Sbjct: 496 SADHTVKLWSLKSSFDFVPGTTRKVTTLKLEQTRQIDFTDDVLAVKISPDGRFVAASLLD 555 Query: 224 GTVLCQLINKLK 259 TV ++ LK Sbjct: 556 NTVKVYYLDSLK 567 >SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1935 Score = 26.2 bits (55), Expect = 5.4 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = +2 Query: 113 SLPSATLXKEKEAQEWIEGVLGAKFPPGELFEDVLKDGTV--LCQLINKLKPGSVPKIN 283 SLP EKEA++++ G K EL++ + D V + L+N L S PK+N Sbjct: 1771 SLPGLNASSEKEARDYLNKFAGNK--TDELYQMLCNDPNVFDIESLVNSLI--SYPKMN 1825 >SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 437 Score = 25.4 bits (53), Expect = 9.4 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = -1 Query: 543 WPAFRTSSEKSRLHSSAGLGPRQGPLHSA 457 WP FR+ +S L+ ++G P P +S+ Sbjct: 112 WPYFRSLRRESMLYHTSGSYPESQPPYSS 140 >SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe|chr 1|||Manual Length = 886 Score = 25.4 bits (53), Expect = 9.4 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -1 Query: 753 YHFRVDIHKGLQSHISVHYHTNLYKIILKINITFCW 646 Y++ V I + LQS+IS K IL I CW Sbjct: 202 YNWWVSILRRLQSNISTSERITYTKAILAIAKHHCW 237 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,198,954 Number of Sequences: 5004 Number of extensions: 68421 Number of successful extensions: 176 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 176 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 383374054 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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