Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_C15
(789 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 1e-23
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 5e-22
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 75 7e-14
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05) 75 7e-14
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 1e-11
SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8) 49 5e-06
SB_36121| Best HMM Match : CH (HMM E-Value=0.0017) 45 6e-05
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 39 0.005
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 36 0.028
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 36 0.037
SB_53975| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.049
SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_15403| Best HMM Match : CH (HMM E-Value=0) 30 1.9
SB_58465| Best HMM Match : zf-B_box (HMM E-Value=0.00022) 29 3.2
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_54206| Best HMM Match : SET (HMM E-Value=0.029) 28 7.5
SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26) 28 7.5
SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0) 28 9.9
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31) 28 9.9
SB_42674| Best HMM Match : DUF26 (HMM E-Value=1) 28 9.9
SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 9.9
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 107 bits (257), Expect = 1e-23
Identities = 76/188 (40%), Positives = 105/188 (55%), Gaps = 8/188 (4%)
Frame = +2
Query: 86 LWNVKFALRSLPSATLXKEKEAQEWIEGVLGAKF--PPG--ELFEDVLKDGTVLCQLINK 253
+W VK + S T KE+EA++WI+ VLG G + LKDG VLC+L N+
Sbjct: 417 VWVVKAGIDSKYDPT--KEEEARKWIDTVLGESIFGENGGVDTVHQTLKDGQVLCRLANR 474
Query: 254 LKPGSVPKINTTGGQFKMMENITNFQSAIKA-YGVPDIDVFQTVDLWEKKDIAQVVSTLF 430
L G KIN FK MENI NF S I+ GV D+FQTVDL+EK ++ V+ +
Sbjct: 475 L--GGDLKINQQKMPFKQMENIGNFLSFIENNLGVAKNDLFQTVDLYEKSNMWNVICCIH 532
Query: 431 ALGRESYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVI-GLQAG--SNKGATQSGQN 601
A+GR +Y + P LGPK + + R F++ L G+T+I Q G + AT SGQ+
Sbjct: 533 AVGRRAYSLGK-DVPQLGPKESTKNPRQFTERQLNEGKTIINSFQMGPAAKNVATASGQS 591
Query: 602 LGAGRKIL 625
G R+I+
Sbjct: 592 FGRQRQII 599
>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 101 bits (243), Expect = 5e-22
Identities = 65/155 (41%), Positives = 90/155 (58%), Gaps = 6/155 (3%)
Frame = +2
Query: 98 KFALRSLPSATLXKEKEAQE--WIEGVLGAKFPPGELFED----VLKDGTVLCQLINKLK 259
K L SL A + AQ WIEG+LG + G+ D VLKDG VLC++ NKL
Sbjct: 53 KTPLSSLRDAKYDSDLAAQATAWIEGILGERVFGGKTGADDVHEVLKDGQVLCRVANKL- 111
Query: 260 PGSVPKINTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALG 439
G KIN++ FKMMEN F GVP D+FQTVDL+EK+++ V++ + ALG
Sbjct: 112 -GGNIKINSSKMAFKMMENTGKFLEFCDTIGVPKTDMFQTVDLYEKQNMPGVINGIHALG 170
Query: 440 RESYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQ 544
R+++ + + LGPK A R+F++E +AGQ
Sbjct: 171 RKAHSTGK-TCLALGPKEASANPREFTEEQRRAGQ 204
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 74.9 bits (176), Expect = 7e-14
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Frame = +2
Query: 98 KFALRSLPSATLXKEKEAQEWIEGVLGAKF--PPGELFEDVLKDGTVLCQLINKLKPGSV 271
KF + P + + K + WIEG F + F++ LK G VLC+L N ++PG++
Sbjct: 54 KFIMSKKPWP-MDRAKVVRMWIEGKTSCNFGGDTADDFQNTLKSGVVLCKLANAIQPGAI 112
Query: 272 PKINTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQV 415
KIN F MMENI NF + ++ GV F T+DL+E K++ QV
Sbjct: 113 KKINNAKMNFMMMENIENFCNFVQTKGVASQYQFVTIDLFEGKNMHQV 160
>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
Length = 195
Score = 74.9 bits (176), Expect = 7e-14
Identities = 56/145 (38%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Frame = +2
Query: 137 KEKEAQEWIEGVLGAK-FPPGELFEDV---LKDGTVLCQLINKLKPGSVPKINTTGGQFK 304
+E+EA+ WIE VLG K F E +DV LKDG +L +L KL G+ K+N FK
Sbjct: 26 QEEEARIWIEAVLGEKVFGGAEGPDDVQKVLKDGKILARLAIKL--GAKIKVNEQNMPFK 83
Query: 305 MMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIA--QVVSTLFALGRESYRHAEWSGPC 478
MENI NF S GV D FQT DL++ ++ Q++ L P
Sbjct: 84 QMENIGNFLSHCGHLGVASGDQFQTADLYDNANMTSCQLIKDLDI-------------PT 130
Query: 479 LGPKPADECKRDFSDEVLKAGQTVI 553
LGPK A+ R+F++E L+AG++++
Sbjct: 131 LGPKEAEANVREFTEEQLRAGESIL 155
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 67.7 bits (158), Expect = 1e-11
Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Frame = +2
Query: 191 PGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGGQFKMMENITNF-QSAIKAYGVPDID 367
PGE F + L+ G +LC++ NK+K ++PKI + F M ENI+ F + G+ ++
Sbjct: 301 PGETFAEPLRSGVILCKIANKIKSNAIPKIGESNKSFVMQENISKFLDFCERVLGLDRLN 360
Query: 368 VFQTVDLWEKKDIAQV 415
+FQTVDL+E++++ V
Sbjct: 361 LFQTVDLFERQNVGMV 376
Score = 37.1 bits (82), Expect = 0.016
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Frame = +2
Query: 242 LINKLKPGSVPKIN-TTGGQF---KMMENITNFQSAIKA--YGVPDIDVFQTVDLWEKKD 403
++N++ PG++ KI+ GG+F +++ENI F A + + +D+F DL+EK +
Sbjct: 203 VMNEVFPGAISKIHGINGGRFHGFQILENIEKFLKACQGEPFNCNVVDLFSPGDLYEKNN 262
Query: 404 IAQV 415
+ QV
Sbjct: 263 VGQV 266
>SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Frame = +2
Query: 203 FEDVLKDGTVLCQLINKLKPGSVPKINTTG--GQFKMMENITNFQSA-IKAYGVPDIDVF 373
F L+DG +LCQ+ N L PG+V + QF ++NI NF +A + + + D D+F
Sbjct: 51 FAQSLRDGVLLCQVANVLHPGAVVDVGMKPQMSQFMCLKNIRNFLTACTRLFNLADGDLF 110
Query: 374 QTVDLWEKKDIAQVVSTLFAL 436
+L++ D +VV+TL L
Sbjct: 111 DANELYDVSDFGKVVNTLSKL 131
>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Frame = +2
Query: 248 NKLKPGSVPKINTTGGQ--FKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDI 406
N ++PG + K + G+ FKMMENI F + IK+YGV + +F TVDL+EK+++
Sbjct: 189 NAIQPGVIKKPHLNPGKMGFKMMENIGWFVNFIKSYGVQEEYIFVTVDLYEKRNV 243
>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
Length = 89
Score = 48.8 bits (111), Expect = 5e-06
Identities = 30/83 (36%), Positives = 47/83 (56%)
Frame = +2
Query: 302 KMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESYRHAEWSGPCL 481
+ MENI NF ++ GV +D+FQTVDL+EK+++A + R + P L
Sbjct: 16 RKMENIGNFLLFCESLGVSKVDLFQTVDLYEKQNMA------------AARAKGLNCPQL 63
Query: 482 GPKPADECKRDFSDEVLKAGQTV 550
GPK A+ R F ++ L+AG+ +
Sbjct: 64 GPKEAEANPRSFDEDKLRAGKGI 86
>SB_36121| Best HMM Match : CH (HMM E-Value=0.0017)
Length = 209
Score = 45.2 bits (102), Expect = 6e-05
Identities = 28/83 (33%), Positives = 42/83 (50%)
Frame = +2
Query: 146 EAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGGQFKMMENITN 325
EA+ WIE F + F + L DG +LC+LI + SV +IN G +N++
Sbjct: 32 EARRWIERATFTPFKNDD-FRESLADGVLLCELIVNVANISVGRINKQGTAHAGRDNLSV 90
Query: 326 FQSAIKAYGVPDIDVFQTVDLWE 394
F A +A G+ +F+ DL E
Sbjct: 91 FFRACEALGLDKYQLFEHEDLDE 113
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 41.5 bits (93), Expect = 8e-04
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 266 SVPKINTTGGQFKMMENITNFQSAIKA--YGVPDIDVFQTVDLWEKKDIAQVVSTLFALG 439
+ P N M ENI NF +A + + D+FQTV L+E++++ QV+S + A
Sbjct: 884 NTPSTNRKSTSLGMQENIANFLNACQEEPFNCNPQDLFQTVYLFERQNLGQVISGIQAFA 943
Query: 440 RESYRH 457
R+ +H
Sbjct: 944 RKVRKH 949
>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +2
Query: 215 LKDGTVLCQLINKLKPGSVPKINTTGG------QFKMMENITNFQSAIKAYGVPDIDVFQ 376
L DG VLC L+N G++P I+ K M+N+ F A K GV +
Sbjct: 336 LADGVVLCHLVNSAYKGTIPSIHIPSAGVPKLTMTKCMKNVDYFLEACKKLGVDRELLCS 395
Query: 377 TVDLWEKKDIAQVVSTLFAL 436
+ D+ ++K +V +T+ AL
Sbjct: 396 SADILQEKSPQRVCATVQAL 415
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 38.7 bits (86), Expect = 0.005
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Frame = +2
Query: 140 EKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKP---------------GSVP 274
+++ WI +LG + + F +L G VLC+L N ++ G P
Sbjct: 29 KEDLASWISRLLGEEELNTDTFTSMLDTGVVLCRLANFIQTVGEEFFVRNPKFPRRGLFP 88
Query: 275 KINTT-------GGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFA 433
T G F +N++NF + VPD+ +F+T DL K+ V+ TL
Sbjct: 89 ACGVTYKQRGATHGSFVARDNVSNFIRWCRELRVPDVIMFETEDLVLNKNEKTVLLTLLE 148
Query: 434 LGRESYR 454
+ R++++
Sbjct: 149 VARKAFK 155
>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
Length = 820
Score = 36.3 bits (80), Expect = 0.028
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Frame = +2
Query: 80 TCLWNVKFALRSLPSATLXKEKEAQEWIEGVLGAKFPPGEL--FEDVLKDGTVLCQLINK 253
T +WN+ L +A ++ A G+ P ++ F+ +DG +C+L+N
Sbjct: 406 TLVWNLIEHFLLLQAAKCSGKRRAPRNASYSTGSVLPHRDINNFDTDWRDGMAICELVNA 465
Query: 254 LKPGSVPKINTTGGQFKMMENITNFQSAIKAYGVP 358
L+PG +P Q+A A+G+P
Sbjct: 466 LQPGLIPDSKYKEKTNSEATAKIGIQTAHDAFGIP 500
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 35.9 bits (79), Expect = 0.037
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 308 MENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESYR 454
M I F +GV D+FQTVDL+EK++I QV + L R R
Sbjct: 700 MVTIAKFLDFCGTFGVAKSDLFQTVDLYEKQNIQQVNDMMKRLIRHHRR 748
>SB_53975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 43
Score = 35.5 bits (78), Expect = 0.049
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 140 EKEAQEWIEGVLGAKFPPGE-LFEDVLKDGTVL 235
+ EA +WIE VLG K G+ + EDVLKDG +L
Sbjct: 10 DAEAVDWIEKVLGEKVCQGKSINEDVLKDGQIL 42
>SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 32.3 bits (70), Expect = 0.46
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +2
Query: 473 PCLGPKPADECKRDFSDEVLKAGQTVI 553
P LGPK A+ R+F++E L+AG++++
Sbjct: 10 PTLGPKEAEANVREFTEEQLRAGESIL 36
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 477 QGPLHSACL*DSRPRANSVLTTW-AMSFFSHRS--TVWNTSMSGTPYALIADW 328
+ P A L DSRP A S+LT W ++ SH + V +S Y L A+W
Sbjct: 1902 KSPQLRASLADSRPPATSLLTQWQGVATTSHETPHVVMEFLLSLQQYELAAEW 1954
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/71 (29%), Positives = 39/71 (54%)
Frame = +2
Query: 59 KHSHNHTTCLWNVKFALRSLPSATLXKEKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLC 238
KHSH+ V FA +++L +++ +++ + A +L+E V KDG +LC
Sbjct: 39 KHSHSKEE---QVAFA--DWINSSLKEDESVHKYLP--IDASEDSSDLYEKV-KDGILLC 90
Query: 239 QLINKLKPGSV 271
++IN PG++
Sbjct: 91 KMINLSAPGTI 101
>SB_58465| Best HMM Match : zf-B_box (HMM E-Value=0.00022)
Length = 476
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 208 GCPQGRHCSLPAHQQAEAWLCPQDQHHRWTVQNDGEHHKLPVCNQSIRCTRHRCVPNRRS 387
G QG C L + +++ + TVQ + EH K+ + ++I + + +
Sbjct: 267 GKHQGHRCDLASRLATNV----REELSKITVQIEEEHEKIVMARRAIEARKEAITQKKEA 322
Query: 388 MGEK-RHRPSSQHTV 429
+G+K H+ S TV
Sbjct: 323 LGQKIAHQASGIRTV 337
>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 479 LGPKPADECKRDFSDEVLKAGQTVIG 556
LGP P+D+ RDF L++GQ V G
Sbjct: 233 LGPDPSDKKVRDFIWNTLQSGQVVPG 258
>SB_54206| Best HMM Match : SET (HMM E-Value=0.029)
Length = 160
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 295 TVQNDGEHHKLPVCNQSIRCTRHRCVPNRRSMGEKRH 405
TVQ D E H LP N S T H C PN + + R+
Sbjct: 44 TVQVDKEKHILPASNLSY--TNHSCDPNAEFVFKPRN 78
>SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)
Length = 307
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 526 SPEGRPNCDRSAGWI*QGSHSIRTEPWRRPQDLDRQVNATPAKS 657
+P+ P D + +G H + PW+ P+ D V++T AKS
Sbjct: 170 APQQDPPVDSARARSPRGQHHSKKPPWKAPEQ-DPPVDSTRAKS 212
>SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -1
Query: 480 RQGPLHSACL*DSRPRANSVLTTW-AMSFFSHRSTVWNTSMSGTPYALIADWKF 322
R L+S + +S P N++ TTW ++FFS S +WN + T +++ D +F
Sbjct: 120 RHNSLNSTTMHNSLP--NTIRTTWWPITFFSSFSFMWNWAKL-TTWSVGTDLRF 170
>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 2532
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 158 WIEGVLGAKF--PPGELFEDVLKDGTVLCQLINKLKPGSVP 274
++ G +G K+ PP FE +L+ T +I L PGS P
Sbjct: 1904 FVTGRMGEKYVTPPVLSFESILEQSTPFSPIIFILSPGSDP 1944
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +1
Query: 211 CPQGRHCSLPAHQQA--EAWLCPQDQHHRWTVQNDGEHHKLPVCNQSIRCT 357
CP G +C H + W CP+ H W G + + +CT
Sbjct: 917 CPAGHYCIDGKHPEPCPAGWYCPEGTGHDWQPCPRGTYSPAQYLSHLGQCT 967
>SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 164 EGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTG 292
+G LGA F P +LF + + + ++N G V + TG
Sbjct: 73 QGSLGANFDPSKLFYGYMANLNIWANVLNDFNRGKVYEQGCTG 115
>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
Length = 778
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 20 AVLSSAHHLNTRKKHSHNHTTCLWNVKFALRSLPSATLXKEKEAQEWIEGVLGAKFPPGE 199
A L S H L + K+ H +VK ++PS E+E W+ +L +P E
Sbjct: 53 AFLQSGHLLKSNKRKIHRVIKQENDVKKVWPNMPSWIYFSEEEHALWLNRILDQMWPYVE 112
Query: 200 -LFEDVLK 220
+ + +LK
Sbjct: 113 DMVQGILK 120
>SB_42674| Best HMM Match : DUF26 (HMM E-Value=1)
Length = 493
Score = 27.9 bits (59), Expect = 9.9
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +2
Query: 173 LGAKFPPGELFEDV--LKDGTVLCQLINKLKPGSVPKINTTGGQFKMMENITNFQSAIKA 346
L A PP DV L GT L LKP PK+ G + + +I F S++ A
Sbjct: 89 LMATLPPTSTAHDVERLSTGTKFA-LRQWLKPIVAPKVCNNTGLHRPVAHIPPFTSSVAA 147
Query: 347 YGVPDIDVFQTVDLWEKKDIAQVVST 424
G I + W D ++++ +
Sbjct: 148 QGKAPIKSVSALS-WPGTDQSEIMDS 172
>SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 356
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -1
Query: 471 PLHSACL*DSRPRANSVLTTWAMSFFSHRSTVWNTSMSGTPYALIADW 328
PLH+ L SR R + TW ++FF+ ++ ++ + DW
Sbjct: 134 PLHAGTLITSRRRYFLIAATWVIAFFNASPLLYTMTLDNNNLCQL-DW 180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,165,036
Number of Sequences: 59808
Number of extensions: 574295
Number of successful extensions: 1641
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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