Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_C15
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79755-6|CAB02104.1| 192|Caenorhabditis elegans Hypothetical pr... 129 3e-30
AF169201-2|AAF01679.1| 192|Caenorhabditis elegans CPN-1 protein. 129 3e-30
AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 96 2e-20
U97013-5|AAB52338.1| 142|Caenorhabditis elegans Calponin protei... 75 6e-14
AF039711-7|AAB96713.3| 154|Caenorhabditis elegans Calponin prot... 73 2e-13
U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical pr... 42 7e-04
U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav (... 42 7e-04
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (... 42 7e-04
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein. 42 7e-04
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z83219-7|CAB05698.2| 473|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z80217-10|CAB02296.2| 473|Caenorhabditis elegans Hypothetical p... 30 2.2
U04712-3|AAA81903.1| 357|Caenorhabditis elegans unc-87 protein. 29 2.9
U04712-2|AAA81902.1| 565|Caenorhabditis elegans unc-87 protein. 29 2.9
U04712-1|AAA81901.1| 374|Caenorhabditis elegans unc-87 protein. 29 2.9
U04711-2|AAA81900.1| 357|Caenorhabditis elegans unc-87 protein. 29 2.9
U04711-1|AAA81899.1| 374|Caenorhabditis elegans unc-87 protein. 29 2.9
AF106590-6|AAT68897.1| 544|Caenorhabditis elegans Uncoordinated... 29 2.9
AF106590-5|AAC78234.1| 565|Caenorhabditis elegans Uncoordinated... 29 2.9
AF106590-4|AAK68303.1| 374|Caenorhabditis elegans Uncoordinated... 29 2.9
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 5.0
U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical pr... 29 5.0
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 29 5.0
Z83219-8|CAD57688.1| 455|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z80217-11|CAD57698.1| 455|Caenorhabditis elegans Hypothetical p... 28 6.6
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 28 6.6
AC024204-2|ABA00163.1| 272|Caenorhabditis elegans Hypothetical ... 28 6.6
>Z79755-6|CAB02104.1| 192|Caenorhabditis elegans Hypothetical
protein F43G9.9 protein.
Length = 192
Score = 129 bits (311), Expect = 3e-30
Identities = 74/160 (46%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Frame = +2
Query: 146 EAQEWIEGVLGAKFPP---GELFEDVLKDGTVLCQLINKLKPGSVPKINTTGGQFKMMEN 316
E +W++ V G F + V +DG++LC L N LKPGSV K+NT+ FK MEN
Sbjct: 34 EILQWVQNVTGQSFDTQGDADNLVKVFQDGSLLCTLANSLKPGSVKKVNTSAMAFKKMEN 93
Query: 317 ITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESYRHAEWSGPCLGPKPA 496
I+ F + Y V ++FQTVDL+E +D V+ L +L R+S ++ SG LGPK A
Sbjct: 94 ISFFLKFAEEY-VQKSELFQTVDLYEGQDPNAVLICLASLARKSEKNFGRSG--LGPKEA 150
Query: 497 DECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQNLGAGR 616
+R+++DE LKAG VIGLQ GSNKGAT SG N+G R
Sbjct: 151 QGDRREWTDEQLKAGHNVIGLQMGSNKGATASGLNMGNTR 190
>AF169201-2|AAF01679.1| 192|Caenorhabditis elegans CPN-1 protein.
Length = 192
Score = 129 bits (311), Expect = 3e-30
Identities = 74/160 (46%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Frame = +2
Query: 146 EAQEWIEGVLGAKFPP---GELFEDVLKDGTVLCQLINKLKPGSVPKINTTGGQFKMMEN 316
E +W++ V G F + V +DG++LC L N LKPGSV K+NT+ FK MEN
Sbjct: 34 EILQWVQNVTGQSFDTQGDADNLVKVFQDGSLLCTLANSLKPGSVKKVNTSAMAFKKMEN 93
Query: 317 ITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESYRHAEWSGPCLGPKPA 496
I+ F + Y V ++FQTVDL+E +D V+ L +L R+S ++ SG LGPK A
Sbjct: 94 ISFFLKFAEEY-VQKSELFQTVDLYEGQDPNAVLICLASLARKSEKNFGRSG--LGPKEA 150
Query: 497 DECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQNLGAGR 616
+R+++DE LKAG VIGLQ GSNKGAT SG N+G R
Sbjct: 151 QGDRREWTDEQLKAGHNVIGLQMGSNKGATASGLNMGNTR 190
>AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein
2 protein.
Length = 203
Score = 96.3 bits (229), Expect = 2e-20
Identities = 67/169 (39%), Positives = 88/169 (52%), Gaps = 10/169 (5%)
Frame = +2
Query: 146 EAQEWIEGVLGAKFP----PGELFEDV---LKDGTVLCQLINKLKPGSVPKINTTGGQ-F 301
E +WIE V G +F E DV LKDG +LC+LI KL P N F
Sbjct: 29 EVLKWIENVTGERFSFDVTTCESSTDVSNLLKDGVMLCKLIEKLDPSCRVVYNKKPKMAF 88
Query: 302 KMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESY-RHAEWSGPC 478
MMENI+NF +A K +GV +I FQTVDL+E K +V+ L L + R + P
Sbjct: 89 PMMENISNFLAAAKQFGVMEISCFQTVDLYENKQCYKVIECLRLLAAVAQSRSSHLEHPA 148
Query: 479 LGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQN-LGAGRKI 622
K A R F + V++ G+ VI LQ G+NK A+Q G + G R+I
Sbjct: 149 WVVKLAQSSPRQFPEAVMRRGEMVIPLQYGTNKCASQKGMSPYGLPRQI 197
>U97013-5|AAB52338.1| 142|Caenorhabditis elegans Calponin protein 3
protein.
Length = 142
Score = 74.9 bits (176), Expect = 6e-14
Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 6/130 (4%)
Frame = +2
Query: 71 NHTTCLWNVKFALRSLPSATLXKEKEAQ---EWIEGVLGAKFPP-GEL--FEDVLKDGTV 232
N TT + FA+R + +KEA EWI+ + G GE F ++LKDGT+
Sbjct: 3 NRTTA-GGIGFAVRQKQDSKFI-DKEATLLLEWIKKLSGENISTSGERDNFHNLLKDGTL 60
Query: 233 LCQLINKLKPGSVPKINTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQ 412
LC+ N ++ GS+ K+ F MENI F K GVP+ + FQ+V+L E +D+
Sbjct: 61 LCKAANGIEAGSIKKVQKPISTFACMENINAFVEFAKKQGVPNEETFQSVELVEGRDLFS 120
Query: 413 VVSTLFALGR 442
V TL +LGR
Sbjct: 121 VCVTLLSLGR 130
>AF039711-7|AAB96713.3| 154|Caenorhabditis elegans Calponin protein
4 protein.
Length = 154
Score = 73.3 bits (172), Expect = 2e-13
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Frame = +2
Query: 155 EWIEGVLGAKFP---PGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGGQFKMMENITN 325
EWI + F + F + LKDG LC+L+N +K GSV KI F +ENI
Sbjct: 35 EWIRDLTKEDFDCEASRDNFREQLKDGQRLCKLVNAIKAGSVKKIMKPISNFNCLENINQ 94
Query: 326 FQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRE 445
F +A ++ GV D + FQ+VDL++ +D+ V TL +L R+
Sbjct: 95 FSTAARSLGVKDEETFQSVDLFDGRDLFSVTVTLQSLARK 134
>U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical
protein C14F11.2 protein.
Length = 638
Score = 41.5 bits (93), Expect = 7e-04
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Frame = +2
Query: 98 KFALRSLPSATLXKEKEAQEWIEGVLGAKFP--PGEL-FEDVLKDGTVLCQLINKLKPGS 268
K LR+ + + A++ + LG F G++ F L DG LC+ INKL P S
Sbjct: 506 KSGLRAPATGIANDVESARKLMREKLGPTFSLNKGDISFSLQLSDGQELCKFINKLHPES 565
Query: 269 VPKINTTGGQF---KMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALG 439
+ ++T + N+ F + GVP+ + +D+ K++ +V T+ +
Sbjct: 566 ISLASSTDSSIATTRSKMNVDRFLQYCRKIGVPETTLCSQMDIISKRNPQKVARTVLTVA 625
Query: 440 R 442
+
Sbjct: 626 K 626
>U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform a protein.
Length = 975
Score = 41.5 bits (93), Expect = 7e-04
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = +2
Query: 203 FEDVLKDGTVLCQLINKLKPGSV--PKINTTG--GQFKMMENITNFQSAIKAY-GVPDID 367
F VL+DG +LC+L N L P + KI T F NI F K Y + D D
Sbjct: 32 FASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDAD 91
Query: 368 VFQTVDLWEKKDIAQVVSTL 427
+F DL+ +V+ TL
Sbjct: 92 LFTAEDLYYMNGFQKVLKTL 111
>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform b protein.
Length = 1007
Score = 41.5 bits (93), Expect = 7e-04
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = +2
Query: 203 FEDVLKDGTVLCQLINKLKPGSV--PKINTTG--GQFKMMENITNFQSAIKAY-GVPDID 367
F VL+DG +LC+L N L P + KI T F NI F K Y + D D
Sbjct: 64 FASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDAD 123
Query: 368 VFQTVDLWEKKDIAQVVSTL 427
+F DL+ +V+ TL
Sbjct: 124 LFTAEDLYYMNGFQKVLKTL 143
>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
Length = 1007
Score = 41.5 bits (93), Expect = 7e-04
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = +2
Query: 203 FEDVLKDGTVLCQLINKLKPGSV--PKINTTG--GQFKMMENITNFQSAIKAY-GVPDID 367
F VL+DG +LC+L N L P + KI T F NI F K Y + D D
Sbjct: 64 FASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDAD 123
Query: 368 VFQTVDLWEKKDIAQVVSTL 427
+F DL+ +V+ TL
Sbjct: 124 LFTAEDLYYMNGFQKVLKTL 143
>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
protein F09C3.1 protein.
Length = 1391
Score = 33.1 bits (72), Expect = 0.23
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Frame = +2
Query: 131 LXKEKEAQEWIEGVLGAK-FPPGELFEDVLKDGTVLCQLINKLKPGSVP----------- 274
L + +E + W+ L P E+ L++G +L +L N P VP
Sbjct: 45 LCRCEEVRTWLSECLNDDTLVPTTDLEENLRNGVLLARLGNSFAPEVVPEKGIFDIRQEK 104
Query: 275 -KINTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESY 451
+ N ++ +NI ++ A+++ +P+I + +T D++E +++ + V LFAL +
Sbjct: 105 YRQNDATPVYRHSDNIMQWRRAMESVRLPEIFIPETADVFEGRNM-KTVFCLFALATLLH 163
Query: 452 R 454
R
Sbjct: 164 R 164
>Z83219-7|CAB05698.2| 473|Caenorhabditis elegans Hypothetical
protein C31C9.1a protein.
Length = 473
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = -1
Query: 414 TWAMSFFSHRSTVWNTSMSGTPYAL---IADWKFVMFSIILNCPPVVLILGTEPGF-SLL 247
++AM + + VW +S +GT Y L IADW + + P + T PG S
Sbjct: 378 SFAMQSYDGKKLVWGSSRNGTMYELNLFIADWIDYPSNTTV-APAAPTVTTTTPGTPSTA 436
Query: 246 MSWQRTVPSLRTSSNSSPGGNLA 178
TV + + +SP +L+
Sbjct: 437 APAAPTVTTTTPGTTTSPSAHLS 459
>Z80217-10|CAB02296.2| 473|Caenorhabditis elegans Hypothetical
protein C31C9.1a protein.
Length = 473
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = -1
Query: 414 TWAMSFFSHRSTVWNTSMSGTPYAL---IADWKFVMFSIILNCPPVVLILGTEPGF-SLL 247
++AM + + VW +S +GT Y L IADW + + P + T PG S
Sbjct: 378 SFAMQSYDGKKLVWGSSRNGTMYELNLFIADWIDYPSNTTV-APAAPTVTTTTPGTPSTA 436
Query: 246 MSWQRTVPSLRTSSNSSPGGNLA 178
TV + + +SP +L+
Sbjct: 437 APAAPTVTTTTPGTTTSPSAHLS 459
>U04712-3|AAA81903.1| 357|Caenorhabditis elegans unc-87 protein.
Length = 357
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 422 TLFALGRESYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 598
T F GR+ R G + PAD + +E ++ + ++ LQAG+NK +Q G
Sbjct: 93 TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 146
Query: 599 NLGAGRK 619
G GR+
Sbjct: 147 GFGTGRR 153
>U04712-2|AAA81902.1| 565|Caenorhabditis elegans unc-87 protein.
Length = 565
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 422 TLFALGRESYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 598
T F GR+ R G + PAD + +E ++ + ++ LQAG+NK +Q G
Sbjct: 301 TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 354
Query: 599 NLGAGRK 619
G GR+
Sbjct: 355 GFGTGRR 361
>U04712-1|AAA81901.1| 374|Caenorhabditis elegans unc-87 protein.
Length = 374
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 422 TLFALGRESYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 598
T F GR+ R G + PAD + +E ++ + ++ LQAG+NK +Q G
Sbjct: 110 TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 163
Query: 599 NLGAGRK 619
G GR+
Sbjct: 164 GFGTGRR 170
>U04711-2|AAA81900.1| 357|Caenorhabditis elegans unc-87 protein.
Length = 357
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 422 TLFALGRESYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 598
T F GR+ R G + PAD + +E ++ + ++ LQAG+NK +Q G
Sbjct: 93 TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 146
Query: 599 NLGAGRK 619
G GR+
Sbjct: 147 GFGTGRR 153
>U04711-1|AAA81899.1| 374|Caenorhabditis elegans unc-87 protein.
Length = 374
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 422 TLFALGRESYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 598
T F GR+ R G + PAD + +E ++ + ++ LQAG+NK +Q G
Sbjct: 110 TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 163
Query: 599 NLGAGRK 619
G GR+
Sbjct: 164 GFGTGRR 170
>AF106590-6|AAT68897.1| 544|Caenorhabditis elegans Uncoordinated
protein 87, isoform c protein.
Length = 544
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 422 TLFALGRESYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 598
T F GR+ R G + PAD + +E ++ + ++ LQAG+NK +Q G
Sbjct: 280 TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 333
Query: 599 NLGAGRK 619
G GR+
Sbjct: 334 GFGTGRR 340
>AF106590-5|AAC78234.1| 565|Caenorhabditis elegans Uncoordinated
protein 87, isoform a protein.
Length = 565
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 422 TLFALGRESYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 598
T F GR+ R G + PAD + +E ++ + ++ LQAG+NK +Q G
Sbjct: 301 TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 354
Query: 599 NLGAGRK 619
G GR+
Sbjct: 355 GFGTGRR 361
>AF106590-4|AAK68303.1| 374|Caenorhabditis elegans Uncoordinated
protein 87, isoform b protein.
Length = 374
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 422 TLFALGRESYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 598
T F GR+ R G + PAD + +E ++ + ++ LQAG+NK +Q G
Sbjct: 110 TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 163
Query: 599 NLGAGRK 619
G GR+
Sbjct: 164 GFGTGRR 170
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +2
Query: 41 HLNTRKKHSHNHTTCLWNVKFALRSLPSATLXKEKEAQEWI 163
HL ++ ++ HT +W +KF++ AT ++ + W+
Sbjct: 605 HLTVEQELNNEHTGAIWCIKFSICGKLMATAGQDSILRVWV 645
>U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical
protein C53C9.2 protein.
Length = 397
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 524 EVLKAGQTVIGLQAGSNKGATQSG 595
E LK G T + QAG+NK TQ G
Sbjct: 20 EQLKGGNTFLSQQAGTNKFETQKG 43
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +2
Query: 41 HLNTRKKHSHNHTTCLWNVKFALRSLPSATLXKEKEAQEWI 163
HL ++ ++ HT +W +KF++ AT ++ + W+
Sbjct: 605 HLTVEQELNNEHTGAIWCIKFSICGKLMATAGQDSILRVWV 645
>Z83219-8|CAD57688.1| 455|Caenorhabditis elegans Hypothetical
protein C31C9.1b protein.
Length = 455
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -1
Query: 414 TWAMSFFSHRSTVWNTSMSGTPYAL---IADW 328
++AM + + VW +S +GT Y L IADW
Sbjct: 378 SFAMQSYDGKKLVWGSSRNGTMYELNLFIADW 409
>Z80217-11|CAD57698.1| 455|Caenorhabditis elegans Hypothetical
protein C31C9.1b protein.
Length = 455
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -1
Query: 414 TWAMSFFSHRSTVWNTSMSGTPYAL---IADW 328
++AM + + VW +S +GT Y L IADW
Sbjct: 378 SFAMQSYDGKKLVWGSSRNGTMYELNLFIADW 409
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 211 CPQGRHCSLPAHQQAEAWL-CPQ-DQHHRWTVQNDGEHHKLPVCNQSIRCTRHRCVP 375
C + C +P Q+ + CP + H+ + D + N + RCT HRC+P
Sbjct: 197 CESSKKC-IPLEQKCDGRRDCPDGEDEHQCETECDSKGG-----NATFRCTNHRCIP 247
>AC024204-2|ABA00163.1| 272|Caenorhabditis elegans Hypothetical
protein Y73B6A.6 protein.
Length = 272
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 274 QDQHHRWTVQNDGEHHKLPVCNQSIRCTRHRCVPNRRSM 390
QD + QN +H LP+ IRC RH C ++R +
Sbjct: 147 QDAENLAFFQNVARNHNLPL---PIRCHRHECKSDKRPL 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,236,505
Number of Sequences: 27780
Number of extensions: 418037
Number of successful extensions: 1344
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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