Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C15
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.9  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 347 YGVPDIDVFQTVDLWEKKDI--AQVVSTLF 430
           Y   D D+F    LW K +I  AQ + +L+
Sbjct: 116 YHAKDFDIFFKTALWAKNNINEAQYIYSLY 145


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 347 YGVPDIDVFQTVDLWEKKDI--AQVVSTLF 430
           Y   D D+F    LW K +I  AQ + +L+
Sbjct: 116 YHAKDFDIFFKTALWAKNNINEAQYIYSLY 145


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 219 LRTSSNSSPGGNLAPR 172
           LR   + SPGGN  PR
Sbjct: 139 LRHKGDGSPGGNGGPR 154


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 219 LRTSSNSSPGGNLAPR 172
           LR   + SPGGN  PR
Sbjct: 139 LRHKGDGSPGGNGGPR 154


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 11  MSLAVLSSAHHLNTRKKHSHNHTT 82
           M +  LS  HH N +     +HTT
Sbjct: 392 MEVMELSDLHHPNCKINRKVHHTT 415


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 222 SLRTSSNSSPGGNLAPRTPSIHSWASFSFXRVALGSD 112
           ++ ++S S PGG  +  +PS  S    S    +LGS+
Sbjct: 75  AITSTSPSYPGGGSSSPSPSSPSSFFSSVSPTSLGSE 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,844
Number of Sequences: 438
Number of extensions: 5047
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)