Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_C15
(789 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09170.1 68414.m01024 kinesin motor protein-related similar t... 52 6e-07
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse... 50 2e-06
At2g47500.1 68415.m05929 kinesin motor protein-related 49 3e-06
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina... 45 7e-05
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina... 45 7e-05
At3g10310.1 68416.m01237 kinesin motor protein-related similar t... 44 1e-04
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ... 39 0.003
At5g41310.1 68418.m05020 kinesin motor protein-related 38 0.008
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 38 0.010
At3g44730.1 68416.m04814 kinesin motor protein-related similar t... 34 0.12
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ... 34 0.12
At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase fa... 33 0.22
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 33 0.22
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 33 0.29
At5g14570.1 68418.m01708 transporter, putative similar to trans-... 29 3.5
At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-... 29 3.5
At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-... 29 3.5
At3g49210.1 68416.m05378 expressed protein 28 6.1
At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70... 28 6.1
At5g67270.1 68418.m08480 microtubule-associated EB1 family prote... 28 8.1
At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent phos... 28 8.1
At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent phos... 28 8.1
At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent phos... 28 8.1
>At1g09170.1 68414.m01024 kinesin motor protein-related similar to
GB:AAB61066
Length = 1010
Score = 51.6 bits (118), Expect = 6e-07
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 20/144 (13%)
Frame = +2
Query: 101 FALRSLP-SATLXKEKEAQEWIE---GVLGAKFPPGELFED----VLKDGTVLCQLINKL 256
F R LP + + EA W+ GV+G + P + E+ L+ G +LC ++N++
Sbjct: 43 FGGRDLPVDPSDLRRYEAARWVRNTLGVVGGRDLPADPSEEDFRIALRSGILLCNVLNRV 102
Query: 257 KPGSVPK---------INTTG---GQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKK 400
KPG+VPK +N G F+ EN+ NF ++ G+P F+ D +
Sbjct: 103 KPGAVPKVVEAPNDPLVNQDGAALSAFQYFENLRNFLVFVEEMGIP---TFEVSDFEKGG 159
Query: 401 DIAQVVSTLFALGRESYRHAEWSG 472
A++V + AL +SYR + SG
Sbjct: 160 KSARIVECVLAL--KSYREWKQSG 181
>At5g27000.1 68418.m03221 kinesin motor protein-related
non-consensus AT donor splice site at exon 12;
non-consensus AC acceptor splice site at exon 13
Length = 987
Score = 49.6 bits (113), Expect = 2e-06
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 16/147 (10%)
Frame = +2
Query: 74 HTTCLWNVKFALRSLPSATLXKEKEAQEWIEGVLGA---KFPPGELFEDV----LKDGTV 232
H++ +V R + ++L + EA W+ ++G K PGE E+ L+ G V
Sbjct: 26 HSSRSSDVGLVSRKVEESSL-RRYEAAGWLRDMIGVSNGKDFPGEPSEEEFRLGLRSGIV 84
Query: 233 LCQLINKLKPGSVPKI-----NTTGG----QFKMMENITNFQSAIKAYGVPDIDVFQTVD 385
LC ++NK+ PGSV K+ + G F+ ENI NF AI+ G+P F+ D
Sbjct: 85 LCNVLNKVNPGSVSKVVEAPDDVADGAALSAFQYFENIRNFLVAIEEMGLPS---FEASD 141
Query: 386 LWEKKDIAQVVSTLFALGRESYRHAEW 466
+ + ++V+ + AL +SY +EW
Sbjct: 142 MEKGGKSIRIVNCILAL--KSY--SEW 164
>At2g47500.1 68415.m05929 kinesin motor protein-related
Length = 974
Score = 49.2 bits (112), Expect = 3e-06
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 19/128 (14%)
Frame = +2
Query: 146 EAQEWIE---GVLGAKFPPGELFEDVLK----DGTVLCQLINKLKPGSVPKI-------- 280
EA W+ GV+GAK P E E+ L+ G +LC+++NK++PG+V K+
Sbjct: 49 EAANWLRRMVGVVGAKDLPAEPTEEGLRLGLRSGIILCKVLNKVQPGAVSKVVESPCDAI 108
Query: 281 ----NTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRES 448
F+ EN+ NF AI+ G P F+ DL + + ++VV+ + A+ +S
Sbjct: 109 LVADGAPLSAFQYFENVRNFLVAIQEMGFP---TFEASDLEQGGNASRVVNCVLAI--KS 163
Query: 449 YRHAEWSG 472
Y + SG
Sbjct: 164 YDEWKQSG 171
>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1065
Score = 44.8 bits (101), Expect = 7e-05
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Frame = +2
Query: 155 EWIEGVLGAKFPPGELFED----VLKDGTVLCQLINKLKPGSVPKINTTGGQFKMME-NI 319
EW+ L P E ED L+DGTVLC L+N+L PGS+ GG F+ I
Sbjct: 47 EWLNETLPYLKLPWEASEDELRACLRDGTVLCSLLNQLSPGSM----RMGGSFEPASVKI 102
Query: 320 TNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESYRHAEWSGPCLGPKPAD 499
F +A+ +P F+ D+ E+ D+ V+ +L AL + S+ + L +
Sbjct: 103 ERFLTAMDEMALPR---FEVSDI-EQGDMVPVLQSLKAL-KASFSDGSYDKNSLAARRRW 157
Query: 500 ECKRDFSD 523
D SD
Sbjct: 158 SLPEDHSD 165
>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1064
Score = 44.8 bits (101), Expect = 7e-05
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Frame = +2
Query: 155 EWIEGVLGAKFPPGELFED----VLKDGTVLCQLINKLKPGSVPKINTTGGQFKMME-NI 319
EW+ L P E ED L+DGTVLC L+N+L PGS+ GG F+ I
Sbjct: 47 EWLNETLPYLKLPWEASEDELRACLRDGTVLCSLLNQLSPGSM----RMGGSFEPASVKI 102
Query: 320 TNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESYRHAEWSGPCLGPKPAD 499
F +A+ +P F+ D+ E+ D+ V+ +L AL + S+ + L +
Sbjct: 103 ERFLTAMDEMALPR---FEVSDI-EQGDMVPVLQSLKAL-KASFSDGSYDKNSLAARRRW 157
Query: 500 ECKRDFSD 523
D SD
Sbjct: 158 SLPEDHSD 165
>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
Length = 897
Score = 44.0 bits (99), Expect = 1e-04
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 15/144 (10%)
Frame = +2
Query: 77 TTCLWNVKFALRSLPSATLXKEKEAQEWIEGVLGA----KFPPGELFEDVLKDGTVLCQL 244
TT L A R A + +A +W++ V+G P + F L++G +LC
Sbjct: 2 TTGLHEFNLASRRAEEAAA-RRFQAVQWLKSVVGQLGIPNQPSEKEFISCLRNGMILCNA 60
Query: 245 INKLKPGSVPKI----NTTGGQFKM------MENITNFQSAIKAYGVPDIDVFQ-TVDLW 391
INK+ PG+V K+ + G++++ EN+ NF A++ +P + D
Sbjct: 61 INKIHPGAVSKVVENYSYLNGEYQLPPAYQYFENVRNFLVALETLRLPGFEASDLEKDNL 120
Query: 392 EKKDIAQVVSTLFALGRESYRHAE 463
E + +VV + LG ++Y +
Sbjct: 121 ESGSVTKVVDCI--LGLKAYHECK 142
>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893, fimbrin [Schizosaccharomyces pombe]
GI:3057144; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 687
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +2
Query: 188 PPGELFEDVLKDGTVLCQLINKLKPGSVPK--INT--TGGQFKMMENITNFQSAIKAYGV 355
P F D++KDG +LC+LIN PG++ + INT T ++ EN+T ++ KA G
Sbjct: 150 PATNAFFDLVKDGVLLCKLINVAVPGTIDERAINTKKTLNPWERNENLTLGLNSAKAIGC 209
Query: 356 PDIDV 370
+++
Sbjct: 210 TVVNI 214
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 37.9 bits (84), Expect = 0.008
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 155 EWIEGVLGAKFPPGELFEDVLK----DGTVLCQLINKLKPGSVPKINTTGGQFKM-MENI 319
EW+ L P E E+ L+ DGTVLC L+N+L PGS+ GG F+ NI
Sbjct: 48 EWLNETLPYLNLPWEASEEELRACLVDGTVLCNLLNQLSPGSM----RMGGSFEPGCVNI 103
Query: 320 TNFQSAIKAYGVP 358
F +A+ +P
Sbjct: 104 ERFLAAMDEMTLP 116
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 37.5 bits (83), Expect = 0.010
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Frame = +2
Query: 77 TTCLWNVKFALRSLPSATLXKEKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKL 256
TT L + + +S A + E++ L +LFE V KDG +LC+LIN
Sbjct: 116 TTLLHTISDSEKSSYVAHINNYLSGDEFLNKCLPINPSSNDLFE-VAKDGVLLCKLINVA 174
Query: 257 KPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDIDV 370
PG++ + INT ++ EN T ++ KA G +++
Sbjct: 175 VPGTIDERAINTKSMLNPWERNENHTLCLNSAKAIGCTVVNI 216
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 137 KEKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSV 271
+EK + WI G+ + +FED L+DG +L Q ++K+ PG V
Sbjct: 396 EEKAFRFWINSFDGSVYI-NNVFED-LRDGWILLQTLDKVSPGIV 438
>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
other kinesin-like proteins of A. thaliana: F02P16.12
(PID:g2191180), katA (D11371), katB (D21137), and katC
(D21138); contains non-consensus AT-AC splice sites at
intron 10
Length = 1087
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 188 PPGELFEDVLKDGTVLCQLINKLKPGSVPKI 280
P + F L++G +LC ++NK+ PGSV K+
Sbjct: 13 PSEDEFSLALRNGLILCNVLNKVNPGSVLKV 43
>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 652
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Frame = +2
Query: 209 DVLKDGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDIDV 370
D++KDG +LC+LIN PG++ + INT ++ EN++ ++ KA G +++
Sbjct: 151 DLVKDGVLLCKLINIAVPGTIDERAINTKKELNPWERTENLSLCLNSAKAIGCTVVNI 208
>At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase
family protein contains similarity to inositol
polyphosphate 5-phosphatase I (GI:10444261) and II
(GI:10444263) [Arabidopsis thaliana]; contains Pfam
profile PF03372: Endonuclease/Exonuclease/phosphatase
family
Length = 437
Score = 33.1 bits (72), Expect = 0.22
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 285 VLILG-TEPGFSLLMSWQRTVPSLRTSSNSSPGGNLAPRTPSIHSWASFSFXRVALGSDL 109
VL+LG EP W + S+SS GG L+P+TPS + + F F + +L
Sbjct: 57 VLVLGDNEPA----AKWLAMINQSLNKSSSSSGGRLSPKTPSFGAGSMF-FAKPSLKKIS 111
Query: 108 SANLTFQRHVV*LCEC 61
+ T R + +C C
Sbjct: 112 ESFRTECRRKLKICNC 127
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 33.1 bits (72), Expect = 0.22
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +2
Query: 197 ELFEDVLKDGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDI 364
+L+E ++KDG +LC+LIN PG++ + INT ++ EN T ++ KA G +
Sbjct: 155 QLYE-LVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVV 213
Query: 365 DVFQTVDLWE 394
++ T DL E
Sbjct: 214 NI-GTQDLAE 222
>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 714
Score = 32.7 bits (71), Expect = 0.29
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +2
Query: 197 ELFEDVLKDGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDI 364
+L+E ++KDG +LC+LIN PG++ + INT ++ EN T ++ KA G +
Sbjct: 156 DLYE-LVKDGVLLCKLINIAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVV 214
Query: 365 DVFQTVDLWE 394
++ T DL E
Sbjct: 215 NI-GTQDLAE 223
>At5g14570.1 68418.m01708 transporter, putative similar to
trans-membrane nitrate transporter protein AtNRT2:1
[Arabidopsis thaliana] GI:3747058, high-affinity nitrate
transporter ACH1 [Arabidopsis thaliana] GI:3608362;
contains Pfam profile PF00083: Sugar (and other)
transporter
Length = 493
Score = 29.1 bits (62), Expect = 3.5
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = +2
Query: 227 TVLCQLINKLKPGSVPKINTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDI 406
+V Q + L G VP ++T ++ IT + A V +F D+ +++ I
Sbjct: 375 SVFVQAASGLVFGVVPFVSTRS--LGVVAGITGSGGTVGAV-VTQFLLFSGDDVRKQRSI 431
Query: 407 AQV--VSTLFALGRESYRHAEWSGPCLGPKPADECKRDFSDEVL 532
+ + ++ +FAL S +W G C GP + E + D S +L
Sbjct: 432 SLMGLMTFVFALSVTSIYFPQWGGMCCGPSSSSE-EEDISRGLL 474
>At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-1,
Zea mays, EMBL:X58573
Length = 235
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 449 YRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKG 580
Y + GP L P+ D KR+F DE+LK T + S KG
Sbjct: 99 YLDNTFEGPSLYPE--DHAKREFGDELLKYTDTFVKTMYVSLKG 140
>At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-1
[Zea mays] EMBL:X58573
Length = 237
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 449 YRHAEWSGPCLGPKPADECKRDFSDEVLK-AGQTVIGLQAGSNKG 580
Y + + GP L P+ D KR+F +E+LK +T + GS KG
Sbjct: 101 YVDSNFDGPSLYPE--DSAKREFGEELLKYVDETFVKTVFGSFKG 143
>At3g49210.1 68416.m05378 expressed protein
Length = 518
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -1
Query: 405 MSFFSHRSTVWNTSMSGTPYALIADWKFVM--FSIILNCPPVVLILGTEPGFSLLMSWQR 232
+SF+ H T S+ G P+AL ++ M +I L P V+ ++P LL W++
Sbjct: 445 ISFYGHPITYMAPSVYGHPHALTMHFQSYMNQMTISLTVDPTVI---SDP-HRLLDDWEK 500
Query: 231 TVPSLRTS 208
++ S++ +
Sbjct: 501 SLQSIKAA 508
>At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70,
putative strong similarity to heat shock protein
GI:425194 [Spinacia oleracea]
Length = 650
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +2
Query: 47 NTRKKHSHNHTTCLWNVKFALRSLPSATLXKEKEA-QEWIEGVLGAKFPPGELFEDVLKD 223
N + +++N + + K A + L +A K ++A + IE + G + + FED +K+
Sbjct: 546 NALENYAYNMRNTIKDEKIASK-LDAADKKKIEDAIDQAIEWLDGNQLAEADEFEDKMKE 604
Query: 224 GTVLCQ-LINKLKPGSVPKINTTGG 295
LC +I ++ G+ P + GG
Sbjct: 605 LESLCNPIIARMYQGAGPDMGGAGG 629
>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
similar to SP|Q9UPY8 Microtubule-associated protein
RP/EB family member 3 (Protein EB3) {Homo sapiens};
contains Pfam profiles PF00307: Calponin homology (CH)
domain, PF03271: EB1 protein
Length = 329
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Frame = +2
Query: 224 GTVLCQLINKLKPGSVP--KIN-TTGGQFKMMEN 316
G V CQL++ + PG+VP K+N +++M++N
Sbjct: 40 GAVHCQLMDSVHPGTVPMHKVNFDAKSEYEMIQN 73
>At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 560
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 485 PKPADECKRDFSDE---VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 616
P PA + +D + ++KA T +GL + + G ++ G N LGAGR
Sbjct: 46 PTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 93
>At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 560
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 485 PKPADECKRDFSDE---VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 616
P PA + +D + ++KA T +GL + + G ++ G N LGAGR
Sbjct: 46 PTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 93
>At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 557
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +2
Query: 485 PKPA-DECKRDFSDE--VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 616
P PA D K D ++KA T +GL + + G ++ G N LGAGR
Sbjct: 44 PTPAMDSLKHGAPDTWTLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,167,266
Number of Sequences: 28952
Number of extensions: 384573
Number of successful extensions: 1113
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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