Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C12
         (572 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    76   1e-14
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)            76   2e-14
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           58   3e-09

>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
 Frame = +2

Query: 53  LCAYSGXKIYPGHGKXMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK-GQ 229
           LC +SG KIYPG G   ++ D + F FLNSKC+     +  P K+ WT +YR++ KK   
Sbjct: 7   LCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAA 66

Query: 230 EEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 340
           +E                IVGA+L  I  KR  KPEV
Sbjct: 67  QEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEV 103


>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
          Length = 164

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
 Frame = +2

Query: 53  LCAYSGXKIYPGHGKXMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK-GQ 229
           LC +SG KIYPG G   ++ D + F FLNSKC+     +  P K+ WT +YR++ KK   
Sbjct: 7   LCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAA 66

Query: 230 EEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 340
           +E                IVGA+L  I  KR  KPEV
Sbjct: 67  QEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEV 103


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 26/61 (42%), Positives = 32/61 (52%)
 Frame = +2

Query: 56  CAYSGXKIYPGHGKXMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 235
           C +    IYPGHG   V+ D K F F  SKC     M+RNPRKV WT  +R    K   +
Sbjct: 6   CWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTK 65

Query: 236 E 238
           +
Sbjct: 66  D 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,842,823
Number of Sequences: 28952
Number of extensions: 158654
Number of successful extensions: 306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)