Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_C11
(830 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 33 0.21
SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08) 30 2.0
SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06) 30 2.6
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3) 29 3.5
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59) 29 3.5
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08) 29 6.1
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0) 28 8.1
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 33.5 bits (73), Expect = 0.21
Identities = 26/93 (27%), Positives = 45/93 (48%)
Frame = +3
Query: 342 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTK 521
I + G ++ E +H S+F +Y+LP + V++ +T DG L + A +E +
Sbjct: 64 IKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEALKAE----PQ 118
Query: 522 NTERVVPIVETGAPYKKDEPVEKTTVETLDVST 620
TE + TG+ + +K TLDVS+
Sbjct: 119 ETEVSLVGASTGSAGDIAKIDDKRFTVTLDVSS 151
>SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)
Length = 857
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 587 KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFCL 766
KD+ RNLG+ D E+ S G++ G + E T + + Q P ++SF L
Sbjct: 303 KDEDRNLGKNKDERHEEY-SKGNENMDGIKPFELTPEIEAIQSTTTDEQNKPNTEQSFLL 361
Query: 767 SD 772
S+
Sbjct: 362 SE 363
>SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06)
Length = 371
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = -2
Query: 253 ILGPMSTKVGISFHRGAKRLNGERFSHGNVNWSSVMVTGCAITSLSRAGKAVTVVKPAKA 74
I+GP+ K G F R G F NW V+ T T +S A + VV+PA
Sbjct: 217 IMGPLWFKHGDIFPVARLRFEGFMFDVPR-NWKQVLRTLYGRTGISAAVPTLMVVEPAPT 275
Query: 73 MK 68
K
Sbjct: 276 QK 277
>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
Length = 444
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 132 AQPVTITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGP 248
+ P T T DQ + + + SPFS APL P FVD P
Sbjct: 219 SSPETFTSDQLSPTYSSPSPFSSKAPL----PVFVDFTP 253
>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
Length = 625
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 414 YSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPY 566
YS+ S + SD YL+ TA +SE +D + R V I TG P+
Sbjct: 171 YSITRGHSVMSEHLNIISDRYLLFTAQVSEGLDFSDINGRAVVI--TGLPF 219
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 548 RDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEER 688
R WR+V R C + S + D GA + + + C TGT E R
Sbjct: 343 RVWRTVPPQRVCLEVPSEKARKIPDDGALTVRTEATGC-TGTANEIR 388
>SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 633
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 671 TRGEERTDHALRTR*SDRKRQRDPTRKRSF 760
TRG ER++HA + RK +++ T+ SF
Sbjct: 240 TRGHERSEHAEKAAELKRKEKKEATKHNSF 269
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 417 SLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKT 593
++PVN+ A G +VT ++ V + T V P+V A K EP +T
Sbjct: 1250 TMPVNTQAVVANMVTQPHGTTIVTPAVANMVTQPHGTTIVTPVVTQSAVATK-EPARRT 1307
>SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08)
Length = 357
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 804 ILISLNANXKLSLKQKLRFRVGSRCLFLSLHRVRRAWSVLSSPRVP 667
IL +L + K S+KQ LRF S +F++ + + ++ S RVP
Sbjct: 112 ILCTLGCSRKPSIKQ-LRFYRSSFVIFITFEIIVMVFGIIQSSRVP 156
>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
Length = 1035
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 354 GSQEAKEDDHDVFASQFFHTYSLPVNSSAA 443
G+ +E+D DV+A Y +P N SAA
Sbjct: 245 GTGVFEEEDDDVYAQDIMSNYDIPKNISAA 274
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,592,477
Number of Sequences: 59808
Number of extensions: 401333
Number of successful extensions: 1513
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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